PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006285-PA
Common NameOsI_07596
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 217aa    MW: 22461.4 Da    PI: 11.1567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006285-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-1895144255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr++  +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+++++g
  BGIOSGA006285-PA  95 RYRGVRRRL-WGKWAAEIRDPR----KaARVWLGTFRTAEDAARAYDAAALRFRG 144
                       7*****877.**********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1295144IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2295153IPR016177DNA-binding domain
PROSITE profilePS5103225.6295152IPR001471AP2/ERF domain
SMARTSM003805.1E-3495158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3195153IPR001471AP2/ERF domain
PRINTSPR003678.2E-1196107IPR001471AP2/ERF domain
CDDcd000183.41E-13104153No hitNo description
PRINTSPR003678.2E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAALFEAAET AAIVAALTRV IADGGRGGGG GVCVPPPAPS LVVPPRAGTG GGRRVDVARE  60
EEMVGVVSAG DHAGGANVAE AAAAVVVAAP ATARRYRGVR RRLWGKWAAE IRDPRKAARV  120
WLGTFRTAED AARAYDAAAL RFRGRRAKLN FPEEVSRPWQ GHDVDHMSCS PPSISNARFL  180
GSWTFGPPPP PSRSVAAVAT TLLGGSHGGN GAENGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2191156167ATERF1
3gcc_A4e-2191156167ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12330GGRGGGGG
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329930610.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078520.0AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878870.11e-147ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0G7W61e-149A0A0E0G7W6_ORYNI; Uncharacterized protein
TrEMBLA2X5W41e-149A2X5W4_ORYSI; Uncharacterized protein
STRINGONIVA02G21760.11e-149(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17401811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-18related to AP2 6l