PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006686-PA
Common NameOsI_06774
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 490aa    MW: 55304.1 Da    PI: 3.8473
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006686-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.47.1e-16101431127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                       l pGf+F+P+d+ lv  +L + + + +l++     +++ +   + + Pw L  ++ +++e+e yf ++       g r+ r ++  g W ++ 
  BGIOSGA006686-PA  10 LSPGFKFNPSDQMLVELFLLPYLIDGELPVRGLvfVEDDHlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQR 100
                       579**********************9988866432444331146679****73444445558888887765..56889999788899**9776 PP

               NAM  88 k..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                       +  + ev+++  +++  + k +L f++ ++++g +t Wvmhey 
  BGIOSGA006686-PA 101 SegKGEVVVApgGEAFLWEKFSLNFHRDDRRSG-STGWVMHEYI 143
                       5223344444455566999*******8777776.9********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-263150IPR003441NAC domain
PROSITE profilePS5100522.62110164IPR003441NAC domain
PfamPF023655.6E-1212143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAAAARSQGL SPGFKFNPSD QMLVELFLLP YLIDGELPVR GLVFVEDDHL GGLPLPPWIL  60
LDRHGRGDED EAYFVAPMGA GDGARQVRSV AGGGKWVKQR SEGKGEVVVA PGGEAFLWEK  120
FSLNFHRDDR RSGSTGWVMH EYIVSPPAGS AVAASHRATH IAFTGHGQNR KRVPDGYVLV  180
LDDAVPAAAA AAAPPPESEQ SNQEEQEYAA YTDQIQQQCF VPEQQMSNQE YFPEAAAEQS  240
NQQFFVPAEE QSSHQLFLPA EEQSNQQFFM PAEEQSSHQF LPAEEQSNYQ QFLPALEQMT  300
QSNQEFAYGE QSQCYIVPEQ QQLSNQEYAY SEQSQCYILP EQQQLSDQEY AYSEQSQCYI  360
LPEQQELSNQ EAEYAFVCYD EQQQQQQQSN QEAEYAFACY DEQQQQQQYL HGDLTSWQEP  420
FVTSSSSSSQ QFLGQEQLLP DGLLLDGFGE ISQQQGDQEY AYCEESQCYI MPEQQQQSNQ  480
EAEFAFACYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2X3I50.0A2X3I5_ORYSI; Uncharacterized protein
STRINGONIVA02G35680.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-09NAC domain containing protein 47