PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006833-PA
Common NameOsI_06458
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 188aa    MW: 19231.4 Da    PI: 9.8166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006833-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.1e-071971555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55
                       +  Er RR+++N+ ++ L +l+ +a+  ++ +   +  + L  A eYI++ q
  BGIOSGA006833-PA 19 RKTTERIRREQMNKLYSDLDSLVGSAPptGGAAAATTRPDRLGVAAEYIRQTQ 71
                      6789*********************5556666666999************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-61784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-81784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDIPPPSAGG GGGGGKTDRK TTERIRREQM NKLYSDLDSL VGSAPPTGGA AAATTRPDRL  60
GVAAEYIRQT QERVDMLREK KRELTGGGGG GSSSSSGAGA ATAAAPEVEV QHLGSGLHAI  120
LFTGPPPTDG ASFHRAIRAV GDAGGQVQNA HFSVAGAKAV YTIHAMIGDG YGGIERVVQR  180
LKEAIRSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688523.17e-70PREDICTED: uncharacterized protein LOC107303503
TrEMBLA2X2P61e-130A2X2P6_ORYSI; Uncharacterized protein
STRINGONIVA02G10570.11e-128(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-14bHLH family protein