PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006918-PA
Common NameOsI_06289
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 721aa    MW: 81447.7 Da    PI: 7.4608
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006918-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1743.1e-2388174190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn+YA++vGFs+rk++ +++  +g+  ++ f Cs+eg++  ++++    r++r++tr +Cka+l+   +++g w v+k+el+HnH l+
  BGIOSGA006918-PA  88 DFYNSYARNVGFSIRKNHANTR-ADGSLCSKYFLCSNEGQPVASTTQ--PGRKKRSSTRSDCKARLQFYISQEGIWTVQKVELDHNHYLV 174
                       6***************997775.9999**************998877..9*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-2088174IPR004330FAR1 DNA binding domain
PfamPF105511.6E-30289383IPR018289MULE transposase domain
PROSITE profilePS5096610.348570605IPR007527Zinc finger, SWIM-type
PfamPF044345.4E-5579603IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-5580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MSGPVVPLAS TAQGPCEPSP GSGPLPVSAA ASDPPAPSSS VPAGGREPSA SGLPPAVTPQ  60
LGDHDQGGLP NCVPKVGMTF NSENEAYDFY NSYARNVGFS IRKNHANTRA DGSLCSKYFL  120
CSNEGQPVAS TTQPGRKKRS STRSDCKARL QFYISQEGIW TVQKVELDHN HYLVSPDKSH  180
MLRSQRRLTP SYQQIVNEMR QEGITAADMQ RVFRQWSRGA ENVHLLKKDT QRKYLQPSYA  240
QKLLEYLKNK QTKNPSFFYA VQLNDDGRIA NFFWTDCQAI VDYACFGDVV SFDTTFETNK  300
FEMPFAPFVG TNHHKQPILF GASLIYDESS ESFNWLFQTF LMAMSGKQPA TIFTDPSAEI  360
IKSVRLVFPN SSHRLCLRHI CHNAVKHLNH VICNHPEFLS DFKRRIYEER SVTFFDLKWK  420
ELVNAYNLDG NDWMNNLYAM REKWAAVYSR DSFYADMMTI QNAEGTSDAL KNFRRKLCLP  480
EFLEEYEKCI TSFRQNELEA DYNSRQTSPV PYVPDLPMLK TAAESYTRNL YSHFEEEFKK  540
LFTLSCSLLS QDRTISTYKL TPLNSEEEAY VVFNSEDTTV SCSCRMYECT GMLCKHALRV  600
LNYSNIFTFP SHYVYKRWTK YAKAGLFGCR NNSQSGNGSS MLRCACISQK MHSVALRYSM  660
SEKALQFLES GVDKLTCEVE NLLSHINLNG NGNDTGQSSG FCNGAMAESL GHSESMYSEG  720
A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.61910.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329872910.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028130.0AK102813.1 Oryza sativa Japonica Group cDNA clone:J033108L18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626734.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLB8ADU40.0B8ADU4_ORYSI; Uncharacterized protein
STRINGORGLA02G0073800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-124FAR1-related sequence 5