PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA006948-PA

Common Name

OsI_06240

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRAS

Protein Properties

Length: 423aa MW: 43960.6 Da PI: 5.7611

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA006948-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	269.5	1.1e-82	37	420	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+l+cA+ v+ gdl a+++ + + a p+g++ Rla++f++AL a + k + ++ + aa+ ++ ++ P+l+f+h BGIOSGA006948-PA 37 GLVLACADLVHRGDLDGARRVAEAVLAAADPRGEAGDRLAHHFARALLALRGG-----GKGGHGGGG--GGVVPSSAAYLAYIKIAPFLRFAH 122 5789****************************************9886666.....222222222..236667789999******** PP GRAS 96 ltaNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 ltaNqaIlea++ + + +Hi+D+d+ +G+QWp+Llqa+a+R+ ++pp++R+Tg g +++ l +tg+rL+ f ++l++p BGIOSGA006948-PA 123 LTANQAILEAAAAAaadaggahrRVLHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLP 211 ******9887777888884455********************88888899*****....****************** PP GRAS 176 fefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerf 257 f+f++l + +l++ + +L+++p+E+laVn+vl lh+l +++l+ +L+ vks++P vv+++e+e +++ ++ +r+ BGIOSGA006948-PA 212 FRFHPLilpCTAELAADPTAALELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRV 299 **554445666668899****************8.5666666....***************888655577788999* PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348 + a++yys++fd+lea++p++s +r vE+e+l+rei +va+ g r + + W ++ ++aG+ p pls +aa+qa+lllr ++ s+g BGIOSGA006948-PA 300 AAAMDYYSSVFDALEATVPPASADRLAVEQEILSREIDAAVAAPGGGgGGGRARDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSEG 392 **************************************988765789************************************** PP GRAS 349 yrveee..sgslvlgWkdrpLvsvSaWr 374 y+ +++ +g+ +l W++r L+svS+W+ BGIOSGA006948-PA 393 YKADDDggRGACFLRWQQRLLMSVSSWQ 420 996667788************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.152	9	397	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-80	37	420	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MLGSSPARDR GGGDDAEASE QPQPPLSPRA GGGEARGLVL ACADLVHRGD LDGARRVAEA 60 VLAAADPRGE AGDRLAHHFA RALLALRGGG KGGHGGGGGG VVPSSAAYLA YIKIAPFLRF 120 AHLTANQAIL EAAAAAAADA GGAHRRVLHI VDLDAAHGVQ WPPLLQAIAD RADPAVGPPP 180 EVRLTGAGTD RDVLLRTGDR LRAFSSSLNL PFRFHPLILP CTAELAADPT AALELHPDET 240 LAVNCVLFLH KLGGDGELAA FLRWVKSMNP AVVTIAEREG VLGGDVDDDN VPDELPRRVA 300 AAMDYYSSVF DALEATVPPA SADRLAVEQE ILSREIDAAV AAPGGGGGGG RARDFDAWAS 360 AARAAGLAPR PLSAFAASQA RLLLRLHYPS EGYKADDDGG RGACFLRWQQ RLLMSVSSWQ 420 PQP

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MLGSSPARDR GGGDDAEASE QPQPPLSPRA GGGEARGLVL ACADLVHRGD LDGARRVAEA  60
VLAAADPRGE AGDRLAHHFA RALLALRGGG KGGHGGGGGG VVPSSAAYLA YIKIAPFLRF  120
AHLTANQAIL EAAAAAAADA GGAHRRVLHI VDLDAAHGVQ WPPLLQAIAD RADPAVGPPP  180
EVRLTGAGTD RDVLLRTGDR LRAFSSSLNL PFRFHPLILP CTAELAADPT AALELHPDET  240
LAVNCVLFLH KLGGDGELAA FLRWVKSMNP AVVTIAEREG VLGGDVDDDN VPDELPRRVA  300
AAMDYYSSVF DALEATVPPA SADRLAVEQE ILSREIDAAV AAPGGGGGGG RARDFDAWAS  360
AARAAGLAPR PLSAFAASQA RLLLRLHYPS EGYKADDDGG RGACFLRWQQ RLLMSVSSWQ  420
PQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-45	42	422	26	381	Protein SCARECROW
5b3h_A	7e-45	42	422	25	380	Protein SCARECROW
5b3h_D	7e-45	42	422	25	380	Protein SCARECROW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	96	GGKGGHGGG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269\|PubMed:12687001}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624347.2	0.0	protein MONOCULM 1-like
Refseq	XP_025879052.1	0.0	protein MONOCULM 1-like
Swissprot	Q84MM9	1e-129	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A2X215	0.0	A2X215_ORYSI; Uncharacterized protein
STRING	ONIVA01G45020.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-57	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]