PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA006989-PA
Common NameOsI_06170
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 157aa    MW: 16557.5 Da    PI: 7.5053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA006989-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.91e-071536224
               AP2  2 gykGVrwdkkrgrWvAeIrdpse 24
                      +++GVr ++ +gr++AeIrdp +
  BGIOSGA006989-PA 15 RFRGVRKRP-WGRYAAEIRDPAK 36
                      69*******.**********844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.00661579IPR001471AP2/ERF domain
PROSITE profilePS5103210.0721540IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-91541IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-51548IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MRCGGAAEED AEAARFRGVR KRPWGRYAAE IRDPAKKARL HHHHHHHLTY PAAAVVAARP  60
ATSSLSSTVE SFGTRPRPVL PPRPPPPPPI PDGDCRSDCG SSASVVDDDC ADAAASPSCR  120
LPFQFDLNLP PGGGGGGGGG FGCAYDDEEL RLTALRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1001270.0flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166401010.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040460.0AP004046.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1145_F01.
GenBankAP0058490.0AP005849.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879040.19e-42ethylene-responsive transcription factor 3
TrEMBLB8AJ861e-107B8AJ86_ORYSI; Uncharacterized protein
STRINGOGLUM02G06860.17e-48(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.13e-10ethylene response factor 8