PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007064-PA
Common NameOsI_06005
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 601aa    MW: 64614.3 Da    PI: 6.1786
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007064-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.2e-292477255
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      pr+rW +eLH+rFv+av++LGG ++AtPk+i++lm+ kg++++hvkSHLQ+YR 
  BGIOSGA007064-PA 24 PRMRWPEELHRRFVHAVRRLGGCHEATPKRIMQLMGAKGVSISHVKSHLQMYRN 77
                      9****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-262078IPR009057Homeodomain-like
SuperFamilySSF466891.45E-132278IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-212477IPR006447Myb domain, plants
PfamPF002493.4E-72576IPR001005SANT/Myb domain
SuperFamilySSF545932.46E-83221580IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
TIGRFAMsTIGR012636.3E-98225591IPR0059564-hydroxyphenylpyruvate dioxygenase
Gene3DG3DSA:3.10.180.101.5E-17232361IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CDDcd083421.49E-22238361No hitNo description
Gene3DG3DSA:3.10.180.102.7E-73371581IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CDDcd072504.85E-78373585No hitNo description
PfamPF009032.6E-6376532IPR004360Glyoxalase/fosfomycin resistance/dioxygenase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009072Biological Processaromatic amino acid family metabolic process
GO:0010189Biological Processvitamin E biosynthetic process
GO:0010236Biological Processplastoquinone biosynthetic process
GO:0016117Biological Processcarotenoid biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003868Molecular Function4-hydroxyphenylpyruvate dioxygenase activity
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MGSAGGCGGS PPVVVRRYNR SEAPRMRWPE ELHRRFVHAV RRLGGCHEAT PKRIMQLMGA  60
KGVSISHVKS HLQMYRNSNN SSNVNRRHPV TPQIDWTTTA QQDEQQRRQM SSFSFLATRT  120
VPAAGIGSHS HQRPHRRQAL HAGDDDGCEL TLSISGGAAE ESKDGGSSIT DDDDELLIQP  180
PAPNIINDDG STRHGSHCCL LLGYIVFKLL VSQFDTAALL VRFWMGICVM DRSDLSTGNS  240
AHASLLLRSA SVAFLFTAPY GGDHGVGADA ATTASIPSFS PGAARRFAAD HGLAVHAVAL  300
RVADAADAFR ASVAAGARPA FQPADLGGGF GLAEVELYGD VVLRFVSHPD GADAPFLPGF  360
EGVSNPGAVD YGLRRFDHVV GNVPELAPVA AYISGFTGFH EFAEFTAEDV GTAESGLNSV  420
VLANNAETVL LPLNEPVHGT KRRSQIQTYL DHHGGPGVQH IALASDDVLG TLREMRARSA  480
MGGFEFLAPP PPNYYDGVRR RAGDVLSEEQ INECQELGVL VDRDDQGVLL QIFTKPVGDR  540
PTFFLEMIQR IGCMEKDESG QEYQKGGCGG FGKGNFSELF KSIEEYEKSL EAKQAPTVQG  600
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sp8_A0.0202594304184-Hydroxyphenylpyruvate Dioxygenase
1sp8_B0.0202594304184-Hydroxyphenylpyruvate Dioxygenase
1sp8_C0.0202594304184-Hydroxyphenylpyruvate Dioxygenase
1sp8_D0.0202594304184-Hydroxyphenylpyruvate Dioxygenase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.119950.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329689080.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050710.0AP005071.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0669G09.
GenBankAP0058040.0AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626163.10.04-hydroxyphenylpyruvate dioxygenase
SwissprotO486040.0HPPD_HORVU; 4-hydroxyphenylpyruvate dioxygenase
TrEMBLB8AIH60.0B8AIH6_ORYSI; Uncharacterized protein
STRINGORUFI02G05290.10.0(Oryza rufipogon)
STRINGONIVA02G05420.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP598722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-20G2-like family protein