PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007071-PA
Common NameOsI_05985
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 259aa    MW: 29042.2 Da    PI: 5.0404
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007071-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.61.5e-20696179
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79
                      lppGfrFhP+d+elvv+yL  k+++ +       +            ++ +vd++k+ePwdLp+ +  + kewyf+  +d+kya+g++++   k
  BGIOSGA007071-PA  6 LPPGFRFHPRDDELVVDYLSGKLRSGDggaA---SgggaagagcptpTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRKYARGHEQTERLK 96
                      79**********************9996650...23455555666556999************7666789**************9886654434 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-243113IPR003441NAC domain
PROSITE profilePS5100516.0146168IPR003441NAC domain
PfamPF023652.8E-8790IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVEARLPPGF RFHPRDDELV VDYLSGKLRS GDGGAASGGG AAGAGCPTPT LIDVDLNKCE  60
PWDLPEIACI GGKEWYFYNL KDRKYARGHE QTERLKSVQY MQEGWVLCRV FYKSRTEAVA  120
APTMESTLPP RYINGGTSRS PLAPLVDSSI SFNHGGYEEV LPCFSSSHHQ QPSPASMNAS  180
AAADDDQDYH HLSEGQRHYS DKKMMRDVQN DQVTTRFDGH LAVKREMSLK KDLSEDEQVE  240
DYYCLTDNGS SETWNFFQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-202881184Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048630.0AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17.
GenBankAP0058040.0AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624259.11e-150NAC domain-containing protein 21/22 isoform X2
TrEMBLB8AI870.0B8AI87_ORYSI; Uncharacterized protein
STRINGOGLUM02G04830.11e-135(Oryza glumipatula)
STRINGOMERI02G05830.11e-137(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1753499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.12e-29NAC family protein