PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007279-PA
Common NameOsI_05523
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 676aa    MW: 78369 Da    PI: 7.6149
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007279-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.12.6e-2211100190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+ +Y+ ++GF+vrk++++ks+ ++ +t+++fvCs++g+r+eekk    ++r+ra+trtgC+ ++ +++ + + +++v++l  eH+H l+
  BGIOSGA007279-PA  11 DFWVKYGGRIGFDVRKNYTNKSDLDQLVTSSRFVCSNQGSRAEEKKY-AVAKRNRAHTRTGCQVRMGITLLReTMTYKVHDLAVEHSHLLQ 100
                       69*******************************************99.9999*****************98889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1511100IPR004330FAR1 DNA binding domain
PfamPF105514.9E-27222316IPR018289MULE transposase domain
PROSITE profilePS509669.545455493IPR007527Zinc finger, SWIM-type
SMARTSM005758.8E-5468495IPR006564Zinc finger, PMZ-type
PfamPF044347.4E-5469491IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MTFNSYEEAW DFWVKYGGRI GFDVRKNYTN KSDLDQLVTS SRFVCSNQGS RAEEKKYAVA  60
KRNRAHTRTG CQVRMGITLL RETMTYKVHD LAVEHSHLLQ TPQTSRLMPS QRNISKHQAV  120
EIEVAYDSGI TPKAAHEFLG RHVGGSANLG YTQRDHKNYL RSRRQRDLLY GEAGSLLKYF  180
QDKIVENPSF HYAVQLDCEE QIANIFWADA RMIADYAHFG DVITFDTTFG TNKESRPFGM  240
FVGFNHFRET VVFGAALMYD ETFESFKWMF NTFLSAHNQK QPQTIFTDQD IAMGKAVSEV  300
FTGAWHGLCT WHISQNAVKH LSPQQTEGSS ILADFSACMY EYEEKEEFEE VFDAMRQKVR  360
KVTWLDSIYN LKEKWAECYM SDVFTIGMRS TQLSESLNSN LKGHLKSDLD IGRFLNRVER  420
VVEEKREKEL QSEYESRKNL PRIMMMTPIL FILEDEHKLT ANPFDQTVSC SCRLFERIGL  480
LCRHALKALD LVNIKLLPEK YVLKRWTREA KCGAIQDMHG RQIVEDPKLS TTLRYRYLYQ  540
QFLPLASRAA DFEECYLLVE EALHAVSKKV EDKIKQTYSD GIAKSNDQST SQLAQNLAHV  600
SGLKKKESRK RVTKRKTNWI DKLQKTKKRK PEEKAEEENM QTDVEEHQEC EAISSYAQLL  660
LGSIDVEDVI LSQKFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613627KRKTNWIDKLQKTKK
2613629KRKTNWIDKLQKTKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619119.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8AG550.0B8AG55_ORYSI; Uncharacterized protein
STRINGSb03g010890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-88FAR1-related sequence 5