PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007584-PA
Common NameOsI_05949
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 465aa    MW: 53224.1 Da    PI: 8.3564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007584-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-071134126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC  ++r G C++ d+C+FaHg
  BGIOSGA007584-PA 11 YKTKLCALWQR-GNCNR-DTCSFAHG 34
                      9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.5E-11542IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.0E-4939IPR000571Zinc finger, CCCH-type
SMARTSM003560.00161035IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1361036IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-51134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MLGPPRRGPA YKTKLCALWQ RGNCNRDTCS FAHGHGDIRR PPSSRGAFTH HPDSADMLTQ  60
LLPEDSMTFF INSSLGISTI CVDDNACAVP EGRRDYRAGD FRGRIDRRFS PRRRHSPGRE  120
SRGHRPLYDR RPSSRERDSS YSRSPSRKSE RRHEKKTDDG ETNSSRSLSL SDNNDEKKKD  180
KFSSGDEKED HEKQLKQIRL DMEALRDDKT QMEVILDEKI DEVRKISSKV NDLEVQLRRE  240
KDECHRMTSK MKKFIKAHAR FLKAQEEVKR SQARFERLGD LLASDILKRG ANEEGSSVNE  300
DLNERSPNTA ATKKRSIPYS TSEEAKAVKK RRERDSDTMT RSDKYRSDVT DFDKTSKGTE  360
ATKSLYLKKK LWEDEKSKLG ANIFTEKVKG SPVRHVLPST GMAAHAIDDL NEAIELEDRH  420
ESIDALLEND ADDKTRSPAI PLQPPPVVQN AYEQYEGDDE EVDVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312331KKRSIPYSTSEEAKAVKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.155531e-111callus| flower| leaf| panicle| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0651980.0AK065198.1 Oryza sativa Japonica Group cDNA clone:J013002E19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879021.10.0zinc finger CCCH domain-containing protein 13 isoform X1
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLB8AI640.0B8AI64_ORYSI; Uncharacterized protein
TrEMBLB9F3550.0B9F355_ORYSJ; Uncharacterized protein
STRINGOS02T0161200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-29C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]