PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007655-PA
Common NameOsI_06074
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SBP
Protein Properties Length: 359aa    MW: 38396.5 Da    PI: 7.2572
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007655-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1291.7e-4097173177
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       +Cq+egC+adls ak+yhrrhkvC++h+ka++vl++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++
  BGIOSGA007655-PA  97 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPT 173
                       6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.0E-3491159IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.11195172IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-3896174IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3098171IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSLPGLPATA ADVYPFGGGG FVKREDGPVL DVVGGGGGGR IGLNLGRRTY FSPADVLAVD  60
RLLLRSRLGG MGMEMGMGMG VLGLGLAAAA HHHQPPRCQA EGCKADLSAA KHYHRRHKVC  120
DFHAKAAAVL AAGKQQRFCQ QCSRFHVLAE FDEAKRSCRK RLTEHNRRRR KPTAGGQSSK  180
DSPPPPPSKK GTDASIASSY TSCDHHKAAA STTTASGVSC LQELADHHDV GGGHQAAMAA  240
PPPPTLSLAA LPPQEEDDED EDGGLGTVLM MQQHHQRRRL QHDGDGDDDV AAAAAHHHLM  300
RSLARQQQQH RHSSGCSNNN DGDDDDHNNN NNILSCSSAS DQQNSSNNNN MHFFEVDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28981711184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154171KRSCRKRLTEHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.798050.0panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878835.10.0squamosa promoter-binding-like protein 5 isoform X1
SwissprotQ0E3F80.0SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLB8AIY20.0B8AIY2_ORYSI; Uncharacterized protein
STRINGOS02T0177300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-34squamosa promoter binding protein-like 8