PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007783-PA
Common NameOsI_06364
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 252aa    MW: 28191.6 Da    PI: 4.9419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007783-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.28.1e-37121431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       +ppGfrF+Ptde+lvv+yL+++++++++ +   i+++d+y+v+Pw+Lp +++++++++ yfF+ +++++    +++r+t sg+Wk tg++k++
  BGIOSGA007783-PA  12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTMAAREA----QARRTTPSGFWKPTGTKKTI 99 
                       79*************************988.55***************778888999*******99875....7899**************** PP

               NAM  93 lsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                       ++    ++  + +k+ +vfy      +g++ + +kt+W+mheyrl
  BGIOSGA007783-PA 100 FVVaggHEVPTAVKRRFVFYlghhqpSGSS-NNNKTSWIMHEYRL 143
                       99976666669*********6554433333.336*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-424177IPR003441NAC domain
PROSITE profilePS5100541.61612177IPR003441NAC domain
PfamPF023652.3E-2213143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM  60
AMYGSDHDRY FFTMAAREAQ ARRTTPSGFW KPTGTKKTIF VVAGGHEVPT AVKRRFVFYL  120
GHHQPSGSSN NNKTSWIMHE YRLMNSPRAA VPSSSSVNRL PTDDLTEEMV LCRISNKDLP  180
KPPFIHNGLL QFSSVGLNGD GYNYLILDHL EPPAMEYPNV DIGNVDDAAA ADDDPGDLDE  240
EIDDSMQRNH GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-281217717165NO APICAL MERISTEM PROTEIN
1ut4_B2e-281217717165NO APICAL MERISTEM PROTEIN
1ut7_A2e-281217717165NO APICAL MERISTEM PROTEIN
1ut7_B2e-281217717165NO APICAL MERISTEM PROTEIN
4dul_A2e-281217717165NAC domain-containing protein 19
4dul_B2e-281217717165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.109441e-88flower| panicle| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072830.0AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBankEF1224790.0EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.10.0NAC domain-containing protein 48-like
TrEMBLB8AE670.0B8AE67_ORYSI; Uncharacterized protein
STRINGONIVA02G09840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.14e-34NAC family protein