PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007823-PA
Common NameOsI_06432
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 539aa    MW: 55622.9 Da    PI: 6.3398
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007823-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.3e-094635011854
                       HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  BGIOSGA007823-PA 463 MFENflRPYPKDSEKEMLAARSGLSRNQVSNWFINARVR 501
                       57766689*****************************88 PP
2BELL30.59e-11324394972
              BELL   9 kakLlslleeVdkrYkqyveqlqtvissFea.......vaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       ++ Ll++l+ +d++Y+q+ +++q   + F++       +ag+ s+ + + +A +a+S  +  L+ +ia+ i
  BGIOSGA007823-PA 324 RSELLTMLQLMDQKYNQCLDEIQSTTARFNTlthatarAAGMSSSSICAPFAHRAVSAMYHGLRRRIAGEI 394
                       689**************************96444444478***************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0024236392IPR006563POX domain
PfamPF075264.4E-24241391IPR006563POX domain
PROSITE profilePS5007111.58442505IPR001356Homeobox domain
CDDcd000867.46E-12445506No hitNo description
Gene3DG3DSA:1.10.10.607.6E-25445516IPR009057Homeodomain-like
SMARTSM003891.9E-7445509IPR001356Homeobox domain
SuperFamilySSF466891.54E-15446514IPR009057Homeodomain-like
PfamPF059201.2E-15462501IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSGNPSFSQL GAVDAAMNGG YFMAASGNGA DVPLFHPAMA PPHDHGGSFG YGDAAAAAMD  60
VGAHFAAANN LVLASLATQL FGAAPAAAAH GHGDYLGATT PPEEEMGGGY DVAVGDSSGG  120
AVSLACLGHG QPGDMAAGWC STSARKPSCN WSSSNAGVHG GSYYLAGVPE AAGFVSAAEA  180
ASELSLSLCS KSSSDSMLNA GGDQCSSAAS RSGLTQMSRV VVVEPEPPLV PYYPAANFAV  240
VVARSRYAAV AQQVLNDAVG CVLGGVADAA ADSASGVDSG SSRPSSCSVA GGAPSSAVSS  300
NNQLIASSGE HTHGGGDASA QWLRSELLTM LQLMDQKYNQ CLDEIQSTTA RFNTLTHATA  360
RAAGMSSSSI CAPFAHRAVS AMYHGLRRRI AGEIMSAAAA AGRPCRGGES SSAVTGGERE  420
RSWESAFIQK HWAVQQLRRG EQQCWRPQRG LPEKSVAVLK AWMFENFLRP YPKDSEKEML  480
AARSGLSRNQ VSNWFINARV RLWKPMIEEM CEELKRSSGG GAGNQALAME HMNSQDVVS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.563220.0panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332670.0CT833267.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA225A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624855.10.0homeobox protein ATH1 isoform X2
RefseqXP_025878539.10.0homeobox protein ATH1 isoform X2
TrEMBLB8AEI60.0B8AEI6_ORYSI; Uncharacterized protein
STRINGOS02T0226600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.16e-54homeobox gene 1