PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007836-PA
Common NameOsI_06460
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 199aa    MW: 20925.4 Da    PI: 5.9277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007836-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-143411152
               AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                       +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  BGIOSGA007836-PA  3 AWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 41
                      6**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-12130No hitNo description
SMARTSM003801.1E-18162IPR001471AP2/ERF domain
PROSITE profilePS5103217.122152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-21146IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-14246IPR016177DNA-binding domain
PfamPF008475.6E-9341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRAWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDAAAL VVKGPSQPSS TSRTWPPRSR  60
ARHSRLPSAT SRPPAARAAA MEPPQPPPSS LTVQADSAAA AFLTPKNGGV SGAGAADDEL  120
EAIVELPRLD ELDAAELVFG AAFQDTAAEH PWCDPVWIDG GYAAAAAAAA AAAAHDDLFG  180
LDADHHGWAQ SVGALLWNL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.273840.0leaf| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624743.14e-94ethylene-responsive transcription factor ERF039
TrEMBLB8AEJ61e-137B8AEJ6_ORYSI; Uncharacterized protein
STRINGOBART02G09680.13e-96(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-16ERF family protein