PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007946-PA
Common NameOsI_06704
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 526aa    MW: 57170.7 Da    PI: 7.3111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007946-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-1364104142
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                       r rW+t Ede l++ ++ +G ++W+t+ar ++ gR + qc+ 
  BGIOSGA007946-PA  64 RRRWSTKEDESLIQMINIYGHNNWETVARAIP-GRNAQQCRV 104
                       78******************************.*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.79459116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-1361111IPR009057Homeodomain-like
SuperFamilySSF466892.83E-1162105IPR009057Homeodomain-like
SMARTSM007171.1E-963114IPR001005SANT/Myb domain
PfamPF002497.8E-1064104IPR001005SANT/Myb domain
CDDcd001675.66E-1166105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MASRAVEGEG EGEEEGEGKG NLANAPEDSH KHCQGEELEA GQSCKINYQD IMDKCGIEIS  60
EKRRRRWSTK EDESLIQMIN IYGHNNWETV ARAIPGRNAQ QCRVREHASN HFKRLSELKL  120
LKSRTSRTSA AIKEHWRGPM KRKLNSYLAS GLLKKSPGLP ENLSVSQSSD SNILQQCDVS  180
SDENKLLSDL RPSLKSKEGV SSKCDGSSSD NQLLSDLRAS LKSKGASSKC DGSSGDNQLL  240
SDLRASLKSK GASSKCDGSS GDNQLLSDLR ASLKSKGASS KCDGSSDENK LLSDLRACLK  300
SKQGASSKCD GSSGENQLLS DLQASLMSKQ RTSSKYKQGA SSKYKQGASS KSKQGTSSKS  360
KQGFIDLCEN TDTSEGESSE LICTERPDPD SGEASQRIRD RLNWRKRARK KLVFLSSPVE  420
LKVSAVAESE RHLQESKEMS PEVNIVSPPA VLQGFSPEVP SVCEKIVEPP LADFNQAKNV  480
CSLETSSDPC TLEQHLANVS DLLDMSYIDG LMIIPPSGCP YDGDFI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.486210.0flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379905360.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050070.0AP005007.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0521F09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.10.0transcription factor MYB64
TrEMBLB8AFC90.0B8AFC9_ORYSI; Uncharacterized protein
TrEMBLB9F4X80.0B9F4X8_ORYSJ; Uncharacterized protein
STRINGOS02T0271900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165241011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.14e-13myb domain protein 3r-4