PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007977-PA
Common NameOsI_06768
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1161aa    MW: 133792 Da    PI: 7.1618
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007977-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.3e-17250332191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY+++A ++GF  ++ +++++      +k t  C k g+++ + +  +++r+++  +rt+C+ak++vk++ +g+we + +++eHnH+l+p
  BGIOSGA007977-PA 250 RFYETHALKTGFVAKRGTNYRR------KKFTIECHKTGTSKLTPNP-QRKRKKNIIERTQCQAKVVVKLN-KGQWEYAAVRNEHNHPLCP 332
                       5*******************99......46789**********9999.9**********************.9****************97 PP
2FAR156.87.7e-18517602191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY ++A  +GF  ++ +++k+      +k ++ C+k+gk + +k++    k+rr++ +++t+Cka++ vk++ +g+we t +++eHnH+l+p
  BGIOSGA007977-PA 517 RFYYAHALLTGFVGKRGTNYKR------KKFHLECNKSGKMKLTKSSenPMKKRRSNLVEKTQCKARVIVKLD-KGEWEFTAVRHEHNHPLCP 602
                       59******************99......4678********998887755789999******************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-15250332IPR004330FAR1 DNA binding domain
PfamPF031013.6E-16517602IPR004330FAR1 DNA binding domain
PfamPF105512.4E-25723815IPR018289MULE transposase domain
PROSITE profilePS509668.80310051041IPR007527Zinc finger, SWIM-type
SMARTSM005750.007810161043IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1161 aa     Download sequence    Send to blast
MYEVRSKTRA TRDFHSVLRN FPCEKQALVH GGDDELLARA GPPPMEDVLM HILPVDSEQR  60
IAENWNRLSA FGEIDLFKRS VLQVFARVNN LGNEISPVQA WCQPELRGEK ASNNDGQTVI  120
TPVELIKKPV EKQVITEGRL QLAGDGYQLL SSNGIDKTAE QLYVDQLGRQ TNSMDQSLQH  180
TDGQNQSHDN MESNEVSSDD RNSDGDSDRS LGNESDKGLG AHYSPSLMEL DNARPPELGM  240
KFATLEDAQR FYETHALKTG FVAKRGTNYR RKKFTIECHK TGTSKLTPNP QRKRKKNIIE  300
RTQCQAKVVV KLNKGQWEYA AVRNEHNHPL CPSYSLRFSK RKRRRNPPSQ KQLDVQRNSD  360
QLTQADNLEE RLSQPLISAD SNEVNNKRMP RHAEISISTV EKEPVDKLQR AGDYQEQSSN  420
GIDKNTERPI VDKLGDQTSS IDHSLQHTEE HNRSHDNVES SEAPSEDTSS ESNSDSSSGD  480
ESDKELGKYF YPSFDELKNS RPPEPGMKFP SLQAAQRFYY AHALLTGFVG KRGTNYKRKK  540
FHLECNKSGK MKLTKSSENP MKKRRSNLVE KTQCKARVIV KLDKGEWEFT AVRHEHNHPL  600
CPSPLLARFI VDHKQMSTGE KSFLRVLQQN RVPPKKIMKI FRKLRICFGD IPFENKDEHN  660
IAQTEHRKAN SDVESALKHF TELQIQNPEF LYVMQKDEDN TVTSIFWTDA RLRIEYDIFG  720
DLIMFDAAYS TDMYNMPFVP IIGINSHATP FLLGCALLKD EKVETFEWML RTFLQVMGGK  780
MPRAVITNQD TSMEKAFAEL MPHVRLRFCK RHVMSKAQEK LGDFMTARGN INTDLHNLVG  840
NSLVETEFEE GWVELIERYN ASENQHLQLM WQTRKSWAPV YFREDLYPFI DSVGSNEGIN  900
SLFKGNMLPK DTIDKFIGQF KEIQENIAKV HEEDRFQSGA DLKYISMQPI EQHAAHIYTR  960
EIFLKVQKEL LHSTAFNVQE IQIGTVYRLE KVFNYENPEF DRNYFEVLAE PGINAFKCQC  1020
AKFTRDGIPC CHIFRLFTQF GINEIPEQYI MPRWTKKFRE EQLKQNKEKL FDKHGIKDSE  1080
NTLRYAMLMS KAAEICRKIC HDEAKCSIFM QELDKIQEKL ITESRENAQN DNPCREQGAL  1140
QQEHRGSSSN TEQEQQHTGG L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291295RKRKK
2339344KRKRRR
3340344RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.518490.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329740960.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0640780.0AK064078.1 Oryza sativa Japonica Group cDNA clone:002-100-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627510.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLB8AFM70.0B8AFM7_ORYSI; Uncharacterized protein
STRINGOS02T0284500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-78FAR1-related sequence 5