PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008112-PA
Common NameOsI_07026
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 343aa    MW: 37761.8 Da    PI: 5.7087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008112-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331e-104489554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +  rE+ RRdr+N+ f+eL + l ++     ++++Ka+iL  A++ +k+L
  BGIOSGA008112-PA 44 KADREKMRRDRLNEQFQELGSTLDPD----RPRNDKATILSDAIQMLKDL 89
                      678********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.7163989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-74093No hitNo description
SuperFamilySSF474591.18E-1341109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1343112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-84389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-84595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDPRSSQAQE DGFFHPRDGA CPADSSGKTE CKTQGSIATC KVQKADREKM RRDRLNEQFQ  60
ELGSTLDPDR PRNDKATILS DAIQMLKDLT SQVNKLKAEY TSLSEEAREL TQEKNELRDE  120
KVSLKFEVDN LNTQYQQRMR VLYPWTGMEP SVVIGPPLPY PFSVPVPVPV PIPSGAVPMH  180
PQLQAYPYFR NQTSGTVSNP CTPYMAYTQP IHPPTDQLSN QFSAPVQHSS SNRSHSMAQD  240
SRSKSSALQQ VSCRGKHDDF DDVATDLELK TPGSSAPLQS EIANKDSSSD LKKKQQFIQE  300
TKGSSLTEGS SSSSRCSSSG PPDVSNSIEG GSVADDQRST VQT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.528970.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329798140.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0697900.0AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence.
GenBankAK1039860.0AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626280.10.0transcription factor bHLH121 isoform X1
TrEMBLB8AGP00.0B8AGP0_ORYSI; Uncharacterized protein
STRINGOS02T0433600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-62bHLH family protein