PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008254-PA
Common NameOsI_07308
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 248aa    MW: 28145.6 Da    PI: 7.594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008254-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.9e-12125166351
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                        +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  BGIOSGA008254-PA 125 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 166
                       79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.269100179IPR001471AP2/ERF domain
SMARTSM003806.1E-5124181IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-8124169IPR016177DNA-binding domain
PfamPF008472.1E-6124167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-7127171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSELAYSPTQ EVKVISLFCN GITERSSRFS PSIWLAPDIT GKDSLPVDFP KPSDNENSVE  60
VAHPNIKPFS VHPLPLTKNS DVLLESSNGS DSLKEEKNHY YPGKEIKRRK RHRRKQYVDQ  120
EPCIMRGVYF KNMKWQAAIK VDKKQIHLGT VGTQEEAARL YDRAAFMCGR EPNFELSEEE  180
KKELQNYTWK DFLDMTRDTI TSKKQRKVGL IRRNKTDSLV GQSDGDTEMI NGGGSSHSED  240
GDAETSAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.140870.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977212180.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.11e-155ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.11e-155ethylene-responsive transcription factor-like protein At4g13040
TrEMBLB8AIA50.0B8AIA5_ORYSI; Uncharacterized protein
STRINGONIVA02G18870.11e-155(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.23e-46ERF family protein