PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008295-PA
Common NameOsI_07375
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 270aa    MW: 28661.3 Da    PI: 6.05
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008295-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13170213447
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT eE+ ++++++  +G+g+Wk+ a+++ k+++  q+ s++qk+
  BGIOSGA008295-PA 170 WTREEHSQFLHGISTYGKGNWKALASEFVKTKSSTQIASHYQKF 213
                       ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.162272IPR001005SANT/Myb domain
SuperFamilySSF466893.37E-72371IPR009057Homeodomain-like
CDDcd001672.35E-42666No hitNo description
PROSITE profilePS500905.4822670IPR017877Myb-like domain
PROSITE profilePS5129412.481162218IPR017930Myb domain
SuperFamilySSF466897.18E-14163219IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-11165215IPR006447Myb domain, plants
SMARTSM007177.0E-8166216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-9169212IPR009057Homeodomain-like
CDDcd001679.73E-9170213No hitNo description
PfamPF002492.5E-10170212IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPTDDAMATG NGDGAAPCPA PLSSVWTRRD EKLLEMLLWR WQLDPHWDRL ATELGGKTAT  60
QVFDRYVCLA DELRLVMAAP AVDTPPAWDV QDEQEAAVAP LPGLEADAAA GAGESAEVTA  120
IGIAAAASPN AAATRAPTIG GGVELKSREL KNPRKTRMAG GGPRKKAEMW TREEHSQFLH  180
GISTYGKGNW KALASEFVKT KSSTQIASHY QKFSIREEKR RLSKCKRASI HDIVSPTTTT  240
SAPESAGAGP SAPPCALIES GAMIAGDDDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624449.11e-162transcription factor SRM1
TrEMBLB8AIL50.0B8AIL5_ORYSI; Uncharacterized protein
STRINGORGLA02G0154300.11e-166(Oryza glaberrima)
STRINGOBART02G17870.11e-166(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-17MYB family protein