 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | BGIOSGA008313-PA | ||||||||
| Common Name | OsI_07419 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 338aa MW: 38303.9 Da PI: 5.8011 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 22.7 | 3.3e-07 | 65 | 101 | 2 | 39 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39
fYn YA+ +GF +r+sk++ + + g +++f+C +e
BGIOSGA008313-PA 65 FYNLYARFTGFGIRRSKNRFK-DGGVKSMQEFCCIREV 101
9***************98876.899999******9985 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 338 aa Download sequence Send to blast |
MESENSTERG DEDRSGQTMD IVPMERIVVE EVEDSVLLPS LLSDPTILVP KIGQTFDEDP 60 DGYAFYNLYA RFTGFGIRRS KNRFKDGGVK SMQEFCCIRE VLVQYGFTEI PKKYILKRWT 120 KDARDCIPKH LEESYLNDKE AAASRTYRNT LLHKSILDLV RLGGTSAETY EKTVEVLTKL 180 VGELKVMSNS QEANNNEIRR RGRTLGKKPA VESDDSSDSK DSMSDGICVG VEDDDGEDVS 240 ADEDFVVEDM IDVNEEDILP PEVRRSHGRP RSTRLMSKGE TSSKAKKKVG ESTSNDESMN 300 HAKERKQPTK QIRYCKLCGG HGHYRNTCGR KSSYERKK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A2X5E2 | 0.0 | A2X5E2_ORYSI; Uncharacterized protein | ||||
| STRING | ORGLA04G0012300.1 | 1e-111 | (Oryza glaberrima) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP15940 | 3 | 5 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|