PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA008400-PA

Common Name

OsI_07599

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 218aa MW: 23800.8 Da PI: 5.0962

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA008400-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.5e-08	92	117	7	35
HHHHHHHHHHHHHHHHHHCTSCCC...TT CS HLH 7 erErrRRdriNsafeeLrellPkaskaps 35 rEr RR+r+N+ f+ +r+l+P++ p BGIOSGA008400-PA 92 VRERERRRRMNDMFAGIRRLVPNL---PE 117 59*********************7...44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-7	83	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-5	91	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-5	93	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGAESDGDD DDVVIVDACN NGKRKVGDGE 60 EEGRGSQGGD DDDDDVVAVH GGGGNRACMF AVRERERRRR MNDMFAGIRR LVPNLPEKTW 120 SWSDNVVVSV LGNIGNMTVR APLCRTGVLA MASAALKRYN ITAVTSLSGT DASRTQNMFM 180 FYTIIDMPDR QPQFVHPKVF EAMYRAAAAE IAAWINCY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.81397	0.0	seed

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624470.2	5e-57	uncharacterized protein LOC107276567 isoform X1
Refseq	XP_025878834.1	4e-57	uncharacterized protein LOC107276567 isoform X2
TrEMBL	A2X5W8	1e-161	A2X5W8_ORYSI; Uncharacterized protein
STRING	OBART02G19960.1	1e-114	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18142	7	7