PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008589-PA
Common NameOsI_07993
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family DBB
Protein Properties Length: 256aa    MW: 27393.6 Da    PI: 5.1167
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008589-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.9e-07446541
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       C+ +e+  +   C  ++  lC+ C +e H        H++ p
  BGIOSGA008589-PA  4 QCDACESAAAAVVCCADEAALCAACDVEVHAAnklagkHQRLP 46
                      7*******9*********************6678888898877 PP
2zf-B_box279.1e-095485334
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                       ++C+ ++ek + +fC +++ l+C+dC + +H
  BGIOSGA008589-PA 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
                      689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
PfamPF006432.4E-5447IPR000315B-box-type zinc finger
SMARTSM003369.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9025299IPR000315B-box-type zinc finger
SMARTSM003364.6E-145299IPR000315B-box-type zinc finger
PfamPF006431.7E-65495IPR000315B-box-type zinc finger
CDDcd000212.75E-75585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKIQCDACES AAAAVVCCAD EAALCAACDV EVHAANKLAG KHQRLPLEAL SARLPRCDVC  60
QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFASAS PCDGGSDAHD  120
SDHHAPPMGS SEHHHHHQQP APTVAVDTPS PQFLPQGWAL QKESSPPLGF QELEWFADID  180
LFHNQAPKGG AAAGRTTAEV PELFASQAAN DVAYYRPPTR TAAAAFTAAT GFRQSKKGRV  240
ELPDDEEDYL IVPDLG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.33970.0callus| leaf| panicle| root| seed| stem| vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018850.0AB001885.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1577.
GenBankAK0610440.0AK061044.1 Oryza sativa Japonica Group cDNA clone:006-205-E01, full insert sequence.
GenBankAK1042930.0AK104293.1 Oryza sativa Japonica Group cDNA clone:001-007-G06, full insert sequence.
GenBankAP0041110.0AP004111.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1058_F07.
GenBankAP0064380.0AP006438.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0030C08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCU4065590.0CU406559.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S101P19, full insert sequence.
GenBankHQ8588050.0HQ858805.1 Oryza sativa Japonica Group isolate UT1183 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626533.11e-160B-box zinc finger protein 25
TrEMBLA0A0E0G9M20.0A0A0E0G9M2_ORYNI; Uncharacterized protein
TrEMBLA2X7020.0A2X702_ORYSI; Uncharacterized protein
STRINGONIVA02G26290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.14e-42salt tolerance homologue