PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008595-PA
Common NameOsI_08007
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 800aa    MW: 90602.5 Da    PI: 8.8779
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008595-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.9e-1754137190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH+++
  BGIOSGA008595-PA  54 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 137
                       5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1554138IPR004330FAR1 DNA binding domain
PfamPF105511.6E-30257350IPR018289MULE transposase domain
PfamPF044342.1E-6519558IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.371526562IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-5537564IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MMEAEEAFPP QRNPRRARRR DLNALDPSLE ESDGEDIGVP EVGMVFNNHT EVNRFYRRYA  60
RRVGFGVSVR RSSFSQEGTC LYLELMCCKG GRPRYEPKFR KRASSTTNCP AKIRVKLWGD  120
KLLHVELAIL DHNHPVSPAM ARFLNSYKQL SGPAKRRLRM GGPGAMPVEE PSKMPVDKLG  180
ALEELLFGES KHHSFVERGR LKFQPGDSEA LRLFFTRMQA KNANFFNVVD LDDEGCVRNV  240
FWADARSRSM YEFYNDVVTL DTSYVVGKYD MPLATFIGVN HHGQSVLLGC GLLSDETAET  300
YSWLFKAWIA CMSGNLPKAI ITGHCRGIQS AVAEVIPGVH HRICLFHIMR KATERLGGLS  360
EYAAISKAFQ KAVYDSLTID EFEGNWNALI TYNGLQGNDW LRSIYECRYS WVPVFLKDTF  420
WAGIFENQLK HFLGKYEMAL QSKYEKEAQA DFETFHKQCP PVSKFYMEEQ LSKVYTHNIF  480
KKFQDEIEAI MYCHVSFINV DGLISTFDVK EWIFLEDGKR TMSKIFTVTN NTDKNDLTCI  540
CGGFQFNGIL CRHSLSVLKF QQVREIPPHY VLDRWKKDFR QLHVMGRPSS DVVPNNRVDR  600
YDYLSMRCLQ LVDSAVLSDK YRLALRLVRE MEKFMLNSNT HDDTQPRIKS RIPKANKPNT  660
VVGQNLVNVG TYNGNDRPKA TTEASSLTQG LDVQKGGAEK GIVPAGYIGL PANVQQFVGS  720
QTAIRPSIVY MVPSGVDPQA FGNGVLMPVV YQQMFQVPQQ PNGTMPDTSA NGKRKRPRAQ  780
KPTEASEQSN GTPATGPTSG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.164800.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329835500.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735270.0AK073527.1 Oryza sativa Japonica Group cDNA clone:J033046M02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625321.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLB8AF380.0B8AF38_ORYSI; Uncharacterized protein
STRINGORGLA02G0203500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-127FAR1-related sequence 6