PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008714-PA
Common NameOsI_08273
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 390aa    MW: 40976.3 Da    PI: 8.495
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008714-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.5e-19309343135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  BGIOSGA008714-PA 309 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 343
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.8E-6940382IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.308303339IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-14303364No hitNo description
SMARTSM004017.4E-18303357IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15307341IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.61E-14308350No hitNo description
PfamPF003202.7E-17309343IPR000679Zinc finger, GATA-type
PROSITE patternPS003440309334IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSSFAHHHHG SLVEKDGRMS ALRSSLRPYE AAEEMAAAAA AGGPAAAWGA VERGAGMMGD  60
GFSVEDLLDL EELCEVDRDG GEQGEAAAAA AAAAAVEKER SSDSHGSSVV SYEPMPLLPP  120
VMDLPAHDVE ELEWVSRIMD DSLAELPLPQ LPAAAAALAA CGKPQHRRPH EGAASALLDP  180
MRTPTICALS TEALVPVKSR RSKRSRASVW SLSGAPLSDS TSSSSTATTS SCSSSASFSP  240
FLQYVDFPAL VASDLLDEQP RSKKSKHGKN GKQKPKKRGR KPKHQQPPHL AAAAAAGGGA  300
LPATGDRRCS HCGVQKTPQW RAGPEGAKTL CNACGVRYKS GRLLPEYRPA CSPTFVSSLH  360
SNSHRKVLEM RRKKETPVIV AAAAPAVASF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.271820.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329946860.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094770.0AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623357.10.0GATA transcription factor 6
TrEMBLA2X7S90.0A2X7S9_ORYSI; GATA transcription factor
STRINGORUFI02G27260.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5