PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008763-PA
Common NameOsI_08370
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 711aa    MW: 74261.3 Da    PI: 6.174
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008763-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.14.3e-843537103374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + L ++A+a ++g+   a+++Larl+++  + g+p+ R a+y++eAL   la+  s+  ++  +s+    +++ +laa+k fs++sP+l+f++
  BGIOSGA008763-PA 353 DELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQFTN 440
                       7899*************************************************..444444555555...499******************** PP

              GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       +ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T++ s +s++  el+ t+++L++fA+el++pfefn++ 
  BGIOSGA008763-PA 441 FTATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRRgaggMALPLLKLTAFMSTASHHPLELHLTQDNLSQFAAELRIPFEFNAV- 532
                       ************998899************************966444489****************************************8. PP

              GRAS 183 akrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++  d+ + +F ++fl++++ ++ l+dsl+a 
  BGIOSGA008763-PA 533 --SLDAFNPAELISSSgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA 616
                       ..99*****999777779********9777665...44....556*********************************************888 PP

              GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        + +++ + k+Er+l++++++++v  ++++     +++  Wr+ + + GFkpv+ s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +L
  BGIOSGA008763-PA 617 -GIDADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSVFAATGFKPVQPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGEL 703
                       .7899*******************999888.....78899***************************************************** PP

              GRAS 368 vsvSaWr 374
                       vs+S+Wr
  BGIOSGA008763-PA 704 VSISSWR 710
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.133325690IPR005202Transcription factor GRAS
PfamPF035141.5E-81353710IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPPYSTSTLS  60
SSLGGGSADS TGVAAVSESS TAAAGATKWG APGEHGGGGK EEWGGGCELP PIPGALDVGL  120
VGGEGWDATA TLGNAAGPDQ SFLNWIIGAA GDLEQPGPPL PVLQQPLIDN AGFGIPAVDT  180
MGFSLDHPLS GVASDLSSSG AHTATGGGGK ASLGFGLFSP EATSLEQPPP SMLFHEGIDT  240
KPPLLGAQPQ FLLNHYQPQP PNPAAALFMP LPPFPEHNHQ SPHLQPPLKR HHAIPDDLYL  300
ARNQQQSSAV APGLAYSPPL HGPAPFQLHP SPPPIRGAMK STAAEAAQQQ LLDELAAAAK  360
ATEAGNSVGA REILARLNQQ LPQLGKPFLR SASYLKEALL LALADSHHGS SGVTSPLDVA  420
LKLAAYKSFS DLSPVLQFTN FTATQALLDE IGGMATSCIH VIDFDLGVGG QWASFLQELA  480
HRRGAGGMAL PLLKLTAFMS TASHHPLELH LTQDNLSQFA AELRIPFEFN AVSLDAFNPA  540
ELISSSGDEV VAVSLPVGCS ARAPPLPAIL RLVKQLCPKV VVAIDHGGDR ADLPFSQHFL  600
NCFQSCVFLL DSLDAAGIDA DSACKIERFL IQPRVEDAVI GRHKAQKAIA WRSVFAATGF  660
KPVQPSNLAE AQADCLLKRV QVRGFHVEKR GAALTLYWQR GELVSISSWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-223517104375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105GGKEEWGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.882690.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329829230.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627415.10.0scarecrow-like protein 6
TrEMBLA2X8160.0A2X816_ORYSI; Uncharacterized protein
STRINGOGLUM02G27370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-93GRAS family protein