PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008802-PA
Common NameOsI_08455
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 261aa    MW: 27051.9 Da    PI: 5.2977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008802-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1671119356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g+
  BGIOSGA008802-PA  71 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 119
                       9***9.55.6*********94....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-2770132IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1870127IPR016177DNA-binding domain
PROSITE profilePS5103220.17870126IPR001471AP2/ERF domain
CDDcd000186.57E-1871128No hitNo description
PfamPF008474.4E-971118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-2771127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MADLTEHPSP TAPPQVQTAG LPVAASPGPA SPHSPSEQGD KTAPGAATAS TMTTASSGEP  60
SPRSSGKHAF YRGIRCRSGK WVSEIREPRK ARRIWLGTYP TAEMAAAAYD VAARALRGAD  120
AVLNFPDATA SRPVPASASP ADIRAAAAAA AAAAAHLERP HGPTGTAYPA TAAAEHHQQQ  180
QQQQYGSGSP AADDVSGYPP MEGGIGNDDF MDEEAIFELP QLLRNMAAGM MMSPPRLSPT  240
TSDVSPEPSE AGESLWSYRD P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13671261172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.741780.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166384460.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8353790.0CT835379.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103L01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624062.10.0ethylene-responsive transcription factor ERF027
TrEMBLA2X8970.0A2X897_ORYSI; Uncharacterized protein
STRINGORUFI02G29210.10.0(Oryza rufipogon)
STRINGOS02T0676800-010.0(Oryza sativa)
STRINGOBART02G27750.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.19e-19ERF family protein