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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | BGIOSGA008860-PA | ||||||||
| Common Name | OsI_08566 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | G2-like | ||||||||
| Protein Properties | Length: 257aa MW: 27176.7 Da PI: 10.269 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.8 | 6e-29 | 196 | 245 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
BGIOSGA008860-PA 196 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 245
9************************************************* PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 1.27E-13 | 194 | 246 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 194 | 245 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.6E-21 | 196 | 246 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.6E-6 | 197 | 245 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 257 aa Download sequence Send to blast |
MELFPAHPDL QLQISPPPAT KSMDLGFWKR ALETSTTTTT AAAAASTGPS VATSSSPPVA 60 SGGVGGGAGG FYQQAAVAPA ANGHGHGHGH HHHHHQHHQL GGALQFLHRT QPIPPQDAAA 120 GGGLQDLAFA RPIRGIPVYN TSRPLPFLQS HHLQHHQHCY ADTIGVAPGA GPRSPSKQAA 180 ALRLAAAPAK RGARAPRMRW TTSLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV 240 KSHLQVRVYD PDWICSS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-13 | 197 | 245 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-13 | 197 | 245 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-13 | 197 | 245 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-13 | 197 | 245 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-13 | 197 | 245 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-13 | 197 | 245 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-13 | 197 | 245 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-13 | 197 | 245 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-13 | 197 | 245 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-13 | 197 | 245 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-13 | 197 | 245 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-13 | 197 | 245 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP005859 | 0.0 | AP005859.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1053A04. | |||
| GenBank | AP005868 | 0.0 | AP005868.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0666E12. | |||
| GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015623606.1 | 1e-175 | probable transcription factor KAN2 isoform X1 | ||||
| Refseq | XP_015623607.1 | 1e-175 | probable transcription factor KAN2 isoform X2 | ||||
| TrEMBL | B8AHB5 | 0.0 | B8AHB5_ORYSI; Uncharacterized protein | ||||
| STRING | ORUFI02G30450.1 | 1e-174 | (Oryza rufipogon) | ||||
| STRING | OS02T0696900-00 | 1e-174 | (Oryza sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP9438 | 34 | 45 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G32240.1 | 2e-24 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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