PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA008875-PA
Common NameOsI_08588
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 284aa    MW: 30867.9 Da    PI: 9.4584
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA008875-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.8e-342781155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  BGIOSGA008875-PA 27 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 81
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-332482IPR009057Homeodomain-like
PROSITE profilePS5129414.0322484IPR017930Myb domain
SuperFamilySSF466899.85E-172784IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-252782IPR006447Myb domain, plants
PfamPF002498.8E-102980IPR001005SANT/Myb domain
PfamPF143791.1E-24126170IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MERAGYGVGV GGAGAVGAGV VLSRDPKPRL RWTPDLHERF VEAVTKLGGP DKATPKSVLR  60
LMGMKGLTLY HLKSHLQKYR LGKQNKKDTG LEASRGAFAA HGISFASAAP PTIPSAENNN  120
AGETPLADAL RYQIEVQRKL HEQLEVQKKL QMRIEAQGKY LQTILEKAQN NLSYDATGTA  180
NLEATRTQLT DFNLALSGFM NNVSQVCEQN NGELAKAISE DNLRTTNLGF QLYHGIQDSD  240
DVKCSQDEGL LLLDLNIKGG GYGHLSSNAM RGGESGLKIS QHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-212783157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-212783157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-212783157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-212783157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.246990.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329694660.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0594480.0AK059448.1 Oryza sativa Japonica Group cDNA clone:001-028-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623757.10.0myb family transcription factor PHL11
TrEMBLA0A0E0GBQ80.0A0A0E0GBQ8_ORYNI; Uncharacterized protein
TrEMBLA2X8M60.0A2X8M6_ORYSI; Uncharacterized protein
STRINGONIVA02G31870.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.14e-64G2-like family protein