PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA009051-PA

Common Name

OsI_08934

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 215aa MW: 23432.6 Da PI: 11.7108

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA009051-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	37.4	8.8e-12	33	114	16	93
TCP 16 ggRdRR...vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 g R RR Rls+++ + f+d+q++LG+ ++sk ieWL+ +a a l + +a + ++s + s+++ + +ka + BGIOSGA009051-PA 33 GVRARRtstTRLSVPTSIAFYDIQNRLGVNRPSKSIEWLICAALVARLFLRPPQHRPAPHPrRPSSGRPSEEQARTRKATVA 114 5677773336******************************999998888888866666333333333333332222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	20.614	19	82	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.0E-9	32	75	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEEVIVGKEC KRPRYALVGV DGHGSDVADE PGGVRARRTS TTRLSVPTSI AFYDIQNRLG 60 VNRPSKSIEW LICAALVARL FLRPPQHRPA PHPRRPSSGR PSEEQARTRK ATVAASPGKS 120 GEKRRKTRSG CAAWKAERIA KLRVWREGWM PRREASTSAA SGGQSWIRKL STPGSGDSCS 180 CSDAKPAKRR WAEKAGEVVA REAGGAERGG GGRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.79459	1e-51	callus\| flower\| leaf\| panicle\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2X9L7	1e-149	A2X9L7_ORYSI; Uncharacterized protein
STRING	ONIVA06G04550.1	1e-117	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19965	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-10	TCP family protein