PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA009118-PA
Common NameOsI_09096
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 649aa    MW: 68231.3 Da    PI: 4.683
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA009118-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30414473159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  BGIOSGA009118-PA 414 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 473
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-31399475IPR003657WRKY domain
SuperFamilySSF1182903.53E-27407475IPR003657WRKY domain
PROSITE profilePS5081128.529409475IPR003657WRKY domain
SMARTSM007741.4E-37414474IPR003657WRKY domain
PfamPF031061.2E-26415473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MCVKAIYFVE YEMTWDNRIK EESSLLIALL IRLKHPDIDL DASGEVALGF KTVPHFSCTK  60
RDKGTQDNQK EARSMSSKKK RAAIDLSLEA ERRRPEEGGG GSDREASDGA AAAAEEDGDV  120
KQREGPKEET GGEEEKVVEV VVDQGEDGSN EEIKYRTQQA EMIEEDKQPA AAANVDDDGG  180
DSDGVGASTE EKHMVTEATG GEGDDGGDSR TPMAQDELSE MQEEMERMKE ENRMLRRVVD  240
KTVRDYYELQ MKLAAYQQQP AAADEPKETE VFLSLGATAA ASAGCGGGFP EAKSKEQAAW  300
RRRSVGSDDS DGGKEDLGLS LSLGASSSYD DDQKAVEARP HDVDGAAAAA MIGGDGSRPA  360
PRGYALLESS KVQGGAAPAA GELAAGGGIT SQSVNPANRK TRVSVRVRCQ GPTMNDGCQW  420
RKYGQKVAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILVTTYEGTH NHPLPVGATA  480
MASTTSAAAT FMLLSSTTSS SSVSDASAAP SSSYLSPYLL NSASPLLMPG ATGGGGGMQH  540
LNLFGNSPSS SSLLAPQAPG SSKYPWSPNH PPLAGAGGNK RPFWSAGGDG DKPAPAALAE  600
NVGAVMSDPN KFSAAIAAAI NNFMGKDGES SSGKSSSKWG VVESLPPHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22401477176WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154489400.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623937.20.0probable WRKY transcription factor 47
TrEMBLB8AJ580.0B8AJ58_ORYSI; Uncharacterized protein
STRINGOS02T0770500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-50WRKY DNA-binding protein 9