PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA009504-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 794aa MW: 87091.8 Da PI: 5.6293

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA009504-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	82.2	7e-26	1	53	26	78
HHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 26 vhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ BGIOSGA009504-PA 1 MHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTRP 53 69************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03110	2.3E-18	1	50	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.786	1	51	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	7.1E-16	1	38	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.19E-22	1	55	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.73E-8	574	681	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-7	578	684	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.03E-8	581	681	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MHAKATTAVV GNTVQRFCQQ CSRFHPLQEF DEGKRSCRRR LAGHNRRRRK TRPEVAVGGS 60 AFTEDKISSY LLLGLLGVCA NLNADNAEHL RGQELISGLL RNLGAVAKSL DPKELCKLLE 120 ACQSMQDGSN AGTSETANAL VNTAVAEAAG PSNSKMPFVN GDQCGLASSS VVPVQSKSPT 180 VATPDPPACK FKDFDLNDTY GGMEGFEDGY EGSPTPAFKT TDSPNCPSWM HQDSTQSPPQ 240 TSGNSDSTSA QSLSSSNGDA QCRTDKIVFK LFEKVPSDLP PVLRSQILGW LSSSPTDIES 300 YIRPGCIILT VYLRLVESAW KELSDNMSSY LDKLLNSSTG NFWASGLVFV MVRHQIAFMH 360 NGQLMLDRPL ANSAHHYCKI LCVRPIAAPF STKVNFRVEG LNLVSDSSRL ICSFEGSCIF 420 QEDTDNIVDD VEHDDIEYLN FCCPLPSSRG RGFVEVEDGG FSNGFFPFII AEQDICSEVC 480 ELESIFESSS HEQADDDNAR NQALEFLNEL GWLLHRANII SKQDKVPLAS FNIWRFRNLG 540 IFAMEREWCA VTKLLLDFLF TGLVDIGSQS PEEVVLSENL LHAAVRMKSA QMVRFLLGYK 600 PNESLKRTAE TFLFRPDAQG PSKFTPLHIA AATDDAEDVL DALTNDPGLV GINTWRNARD 660 GAGFTPEDYA RQRGNDAYLN MVEKKINKHL GKGHVVLGVP SSIHPVITDG VKPGEVSLEI 720 GMTVPPPAPS CNACSRQALM YPNSTARTFL YRPAMLTVMG IAVICVCVGL LLHTCPKVYA 780 APTFRWELLE RGPM

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MHAKATTAVV GNTVQRFCQQ CSRFHPLQEF DEGKRSCRRR LAGHNRRRRK TRPEVAVGGS  60
AFTEDKISSY LLLGLLGVCA NLNADNAEHL RGQELISGLL RNLGAVAKSL DPKELCKLLE  120
ACQSMQDGSN AGTSETANAL VNTAVAEAAG PSNSKMPFVN GDQCGLASSS VVPVQSKSPT  180
VATPDPPACK FKDFDLNDTY GGMEGFEDGY EGSPTPAFKT TDSPNCPSWM HQDSTQSPPQ  240
TSGNSDSTSA QSLSSSNGDA QCRTDKIVFK LFEKVPSDLP PVLRSQILGW LSSSPTDIES  300
YIRPGCIILT VYLRLVESAW KELSDNMSSY LDKLLNSSTG NFWASGLVFV MVRHQIAFMH  360
NGQLMLDRPL ANSAHHYCKI LCVRPIAAPF STKVNFRVEG LNLVSDSSRL ICSFEGSCIF  420
QEDTDNIVDD VEHDDIEYLN FCCPLPSSRG RGFVEVEDGG FSNGFFPFII AEQDICSEVC  480
ELESIFESSS HEQADDDNAR NQALEFLNEL GWLLHRANII SKQDKVPLAS FNIWRFRNLG  540
IFAMEREWCA VTKLLLDFLF TGLVDIGSQS PEEVVLSENL LHAAVRMKSA QMVRFLLGYK  600
PNESLKRTAE TFLFRPDAQG PSKFTPLHIA AATDDAEDVL DALTNDPGLV GINTWRNARD  660
GAGFTPEDYA RQRGNDAYLN MVEKKINKHL GKGHVVLGVP SSIHPVITDG VKPGEVSLEI  720
GMTVPPPAPS CNACSRQALM YPNSTARTFL YRPAMLTVMG IAVICVCVGL LLHTCPKVYA  780
APTFRWELLE RGPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-19	1	50	35	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	602	607	ESLKRT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.59197	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32979871	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072164	0.0	AK072164.1 Oryza sativa Japonica Group cDNA clone:J013130O11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631511.1	0.0	squamosa promoter-binding-like protein 6 isoform X1
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A0P0W540	0.0	A0A0P0W540_ORYSJ; Os03g0833300 protein (Fragment)
STRING	ORUFI03G41710.1	0.0	(Oryza rufipogon)
STRING	OS03T0833300-02	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]