PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA009781-PA
Common NameOsI_13604
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 231aa    MW: 24811.2 Da    PI: 9.7974
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA009781-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.4e-3352109259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  BGIOSGA009781-PA  52 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 109
                       8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-3436110IPR003657WRKY domain
SuperFamilySSF1182908.76E-2943110IPR003657WRKY domain
PROSITE profilePS5081129.96446111IPR003657WRKY domain
SMARTSM007748.6E-3951110IPR003657WRKY domain
PfamPF031062.6E-2652109IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAVSLIGFDS ACVCLIRPAA AATATATAKK GQKRARQPRF AFMTKSEIDH LEDGYRWRKY  60
GQKAVKNSPF PRSYYRCTNS KCTVKKRVER SSDDPSVVIT TYEGQHCHHT ASFQRGVGGA  120
AVAAHIHGAA AVALAEQMSA FVSPPPQPHM LYGLPRLHPP SSETAVSCSM PTTTSLQELN  180
NSEGLQRPGY NNSPQAAVTI AQRPPSPSVP PAVSFDKGLL DDIVPPGVRL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2641108774Probable WRKY transcription factor 4
2lex_A2e-2641108774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.506450.0callus| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335192050.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418590.0AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631421.11e-159probable WRKY transcription factor 57
RefseqXP_015631422.11e-159probable WRKY transcription factor 57
TrEMBLA0A0N7KI301e-171A0A0N7KI30_ORYSJ; Os03g0758000 protein
TrEMBLA2XM601e-171A2XM60_ORYSI; Uncharacterized protein
STRINGOS03T0758000-011e-171(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-53WRKY DNA-binding protein 57