PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA009913-PA

Common Name

OsI_13302

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 785aa MW: 90897.1 Da PI: 7.0378

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA009913-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.1	8.4e-30	67	154	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA++vGFsvr+sks++s+++++i++r+fvCskeg++++++++t k++r+ra r gC+a+++v++++ g+w+v+kl +eHnH++ BGIOSGA009913-PA 67 FYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHHKKQTDTGKRKRKRAIIREGCHAMIEVSQKYYGRWVVIKLIKEHNHAV 154 9*************************************************************************************97 PP
2	FAR1	78	1.9e-24	188	275	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+vr++ s++s +++++++r+fvC++eg + e+++ ++++r+r + r gC+a++++ k++++kw+v+kl l H+Hela BGIOSGA009913-PA 188 FYYAYASRMGFDVRIRLSRRSPKDETFVMRRFVCTREGATPCEENE-NRRKRNRGVPREGCQAMFEIVKKDQDKWVVSKLFLAHTHELA 275 9**************************************99999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-27	67	154	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.7E-21	188	275	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-14	392	476	IPR018289	MULE transposase domain
Pfam	PF04434	1.3E-7	668	706	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.324	669	707	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-6	682	709	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MDNASSEDNL LRDNLVDLND DYTENQMAFD VNSEPVDMNN TSSKANLENS EPFVGMEFES 60 EEAAKVFYMA YASRVGFSVR ISKSRRSRND ESIIMRRFVC SKEGFHHKKQ TDTGKRKRKR 120 AIIREGCHAM IEVSQKYYGR WVVIKLIKEH NHAVAAPSIV RYVAPEEYAQ LEPFAGMEFP 180 SYESAQTFYY AYASRMGFDV RIRLSRRSPK DETFVMRRFV CTREGATPCE ENENRRKRNR 240 GVPREGCQAM FEIVKKDQDK WVVSKLFLAH THELANVPNK VHYIQSNSEV VVLAKSSVLR 300 ENSIAPTLNS PLADLGRNFE KQATNDQEIR EPRRNAFGLD DTQKLLGYFK RLNAENPTFS 360 YAFQVEKNDC LTHAFWADAK ARTSYYYFGD AVTLETSFVE NNDLLPLVMF SGVNHHLQRE 420 MFGCALLTDF TEASYIWLFQ NWIAAMGSHH PTSLTTVYNE AIGSAIAKIF PQTHHLYFTA 480 DILKRSKDIL ADIYFRHVSF EREFYVCINE PETIEMFELS WKKVLDKYDL HDNSWLQSLY 540 RIRQKWVPVY FKGVFTADLS ASQRPESLRN IFEKYFNRRT ALPVFISLFE HLMAGWSERE 600 AVEDLATSFT RPVLRTPSNM MKQVSEIYTT TVFNILEEEF IGSLGYYISS LDNDGLIAVY 660 SVTKEDTEAT CRVRYDTSGN IAKCSCCKFE SCGILCRHIL RVFLALDVRT IPDVYILKRW 720 TKEAKNGFVL DECLRYSELH RDALRYAREG STSGEVFTFA QQTLQVAFAE VVQMKQETFS 780 QCTIR

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MDNASSEDNL LRDNLVDLND DYTENQMAFD VNSEPVDMNN TSSKANLENS EPFVGMEFES  60
EEAAKVFYMA YASRVGFSVR ISKSRRSRND ESIIMRRFVC SKEGFHHKKQ TDTGKRKRKR  120
AIIREGCHAM IEVSQKYYGR WVVIKLIKEH NHAVAAPSIV RYVAPEEYAQ LEPFAGMEFP  180
SYESAQTFYY AYASRMGFDV RIRLSRRSPK DETFVMRRFV CTREGATPCE ENENRRKRNR  240
GVPREGCQAM FEIVKKDQDK WVVSKLFLAH THELANVPNK VHYIQSNSEV VVLAKSSVLR  300
ENSIAPTLNS PLADLGRNFE KQATNDQEIR EPRRNAFGLD DTQKLLGYFK RLNAENPTFS  360
YAFQVEKNDC LTHAFWADAK ARTSYYYFGD AVTLETSFVE NNDLLPLVMF SGVNHHLQRE  420
MFGCALLTDF TEASYIWLFQ NWIAAMGSHH PTSLTTVYNE AIGSAIAKIF PQTHHLYFTA  480
DILKRSKDIL ADIYFRHVSF EREFYVCINE PETIEMFELS WKKVLDKYDL HDNSWLQSLY  540
RIRQKWVPVY FKGVFTADLS ASQRPESLRN IFEKYFNRRT ALPVFISLFE HLMAGWSERE  600
AVEDLATSFT RPVLRTPSNM MKQVSEIYTT TVFNILEEEF IGSLGYYISS LDNDGLIAVY  660
SVTKEDTEAT CRVRYDTSGN IAKCSCCKFE SCGILCRHIL RVFLALDVRT IPDVYILKRW  720
TKEAKNGFVL DECLRYSELH RDALRYAREG STSGEVFTFA QQTLQVAFAE VVQMKQETFS  780
QCTIR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.51810	0.0	callus\| flower\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32973826	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC091532	0.0	AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632988.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632989.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632990.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632991.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B8AQP2	0.0	B8AQP2_ORYSI; Uncharacterized protein
TrEMBL	B9FB80	0.0	B9FB80_ORYSJ; Uncharacterized protein
STRING	OB03G39100.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-130	FAR1-related sequence 5