PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010052-PA
Common NameOsI_13030
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 345aa    MW: 36651.9 Da    PI: 6.7021
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010052-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.13e-082833152254
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       ++yp+ +e+  LA  +gL+ +q+++WF N R +
  BGIOSGA010052-PA 283 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 315
                       89*****************************88 PP
2BELL60.73.3e-201412031072
              BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt+l  +a+SrhF +L+ ai  ++
  BGIOSGA010052-PA 141 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTALMAQAMSRHFGSLRRAILRKL 203
                       8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.0E-1781201IPR006563POX domain
PfamPF075264.6E-2187199IPR006563POX domain
PROSITE profilePS5007111.175256319IPR001356Homeobox domain
SMARTSM003895.4E-9259323IPR001356Homeobox domain
CDDcd000863.90E-11259320No hitNo description
Gene3DG3DSA:1.10.10.601.1E-25264325IPR009057Homeodomain-like
SuperFamilySSF466896.42E-17265327IPR009057Homeodomain-like
PfamPF059204.9E-17276315IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVASKQLHSQ RCGGHYCQLH HHRPEEIAGA GAERHRRDGS SGCGGAGPMV VLTLGSGAAA  60
AEDNGGGRSR CCCGAGGAAP ATMVSPLRGS RYLLPAQELL REAVSAAAAS ARGGDDDDEA  120
VASFPHDGKS TGIGGGGGVQ AKLLSLLSEL ESRHEHYFGE LRRVSASFEP ALGAGATAGY  180
TALMAQAMSR HFGSLRRAIL RKLRLHAAAA ARTRSALLRL VRDAMEEDDE GDGEEEEEVV  240
NRVVRRTKQA AAARAEQAWR PLRGLPEDAV GVLRAWLFDH FLHPYPNDNE KLMLAVATGL  300
SRTQISNWFI NARVRLWKPM VEEMYNDEFD DDDAGSGGGG ASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16265323563Homeobox protein Meis2
3k2a_B1e-16265323563Homeobox protein Meis2
4xrm_A1e-16265323563Homeobox protein Meis2
4xrm_B1e-16265323563Homeobox protein Meis2
5bng_A1e-16265323159Homeobox protein Meis2
5bng_B1e-16265323159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.491630.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329746830.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646650.0AK064665.1 Oryza sativa Japonica Group cDNA clone:002-115-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879418.10.0BEL1-like homeodomain protein 11
TrEMBLA2XKP60.0A2XKP6_ORYSI; Uncharacterized protein
STRINGORGLA03G0273800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.15e-35BEL1-like homeodomain 11