PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010080-PA
Common NameOsI_12961
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 380aa    MW: 39417.9 Da    PI: 7.3446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010080-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.5e-15187233455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  BGIOSGA010080-PA 187 EHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDAVRYVKELQ 233
                       699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.266183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-13187233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-19187243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-18187248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-16188237No hitNo description
SMARTSM003532.6E-16189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEDSSLFMEW AMETLQHLHP LPATPPPAGG GYAGDNATFP SLQALRESSV SQNGMAPPEP  60
TAHEGHRASN SWSSGDTDSV SGGGGGAVME HDGWSTSPNS VRCAAGGGGG LWPVSWNFSS  120
AMTQPCNDQA TPPNPPPTTR ARYGGGGVRY LPAAVSPSPS AQTRRASSKG NGGGGSGSSS  180
AAPYGQEHII AERKRREKIN QRFIELSTVI PGLKKMDKAT ILSDAVRYVK ELQEKLSELE  240
QHQNGGVESA ILLKKPCIAT SSSDGGCPAA SSAVAGSSSS GTARSSLPEI EAKISHGNVM  300
VRIHGENNGK GSLVRLLAAV EGLHLGITHT NVMPFSACTA IITIMAKVED GVSVTAEDIV  360
GKLNTVLQQN SRNSARETKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196ERKRRE
2192197RKRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923990.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071900.0AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629952.10.0transcription factor NAI1
TrEMBLB8AP390.0B8AP39_ORYSI; Uncharacterized protein
STRINGOS03T0671800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-29bHLH family protein