PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010118-PA
Common NameOsI_12866, WRKY60
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 142aa    MW: 15004.4 Da    PI: 8.2263
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010118-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.21.2e-2148105258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 
                       +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve   +dp + + ++Y g H+h
  BGIOSGA010118-PA  48 EDGYEWKKYGQKFIKNIQKNRSYFRCRDQRCGAKKKVEWHPHDPGLnLRVVYDGAHHH 105
                       7******************************************986479********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.242108IPR003657WRKY domain
SuperFamilySSF1182903.92E-2143108IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-2444108IPR003657WRKY domain
SMARTSM007741.5E-2147107IPR003657WRKY domain
PfamPF031064.0E-2048105IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MNNRGAGGGR GQGDDEEPTP TPPPAPPPET APSTVGGGGD GVQLVMPEDG YEWKKYGQKF  60
IKNIQKNRSY FRCRDQRCGA KKKVEWHPHD PGLNLRVVYD GAHHHGSPSS AAGEGGTSAA  120
AAANQYDLST QYFGGAGGPR SQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1338591e-125AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence.
GenBankAP0149591e-125AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-125CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629815.11e-101probable WRKY transcription factor 20 isoform X2
TrEMBLQ0DPW01e-100Q0DPW0_ORYSJ; Os03g0657400 protein
TrEMBLQ6IEM11e-100Q6IEM1_ORYSI; WRKY transcription factor 60
STRINGOS03T0657400-001e-101(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-12WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]