PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010126-PA
Common NameOsI_12845
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 200aa    MW: 22500.2 Da    PI: 4.258
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010126-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.22.9e-213286455
           G2-like  4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55
                      lrW+ +LH+ Fveav+  GG+ +A P ++   +++m+v +Lt +++kSHLQkYR 
  BGIOSGA010126-PA 32 LRWSDDLHKMFVEAVAYHGGPYEAKPTAVketMQAMGVTSLTTHNIKSHLQKYRE 86
                      89************************77722256678999**************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.35E-132688IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-192887IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-173286IPR006447Myb domain, plants
PfamPF002499.6E-63385IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSNSQPAQED DCMSSILVSR LIRAMQPTRS YLRWSDDLHK MFVEAVAYHG GPYEAKPTAV  60
KETMQAMGVT SLTTHNIKSH LQKYRESFSS GVGSLHDHDL LRTTSPSKEA LDLASEMVRD  120
NDAAMAEIEM LNDLLLDHDI EMVETSFSVD DLQMMERELM SEIKLIEHNF EISESALDEY  180
MDDLANYAFD LTGPANSSSP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984430.0panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205352e-83AC120535.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0092N01, complete sequence.
GenBankAC1380042e-83AC138004.3 Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete sequence.
GenBankAP0149592e-83AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-83CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628275.11e-147myb family transcription factor PHL12-like isoform X1
RefseqXP_015628276.11e-147myb family transcription factor PHL12-like isoform X3
RefseqXP_015628277.11e-147myb family transcription factor PHL12-like isoform X3
TrEMBLB8ANJ61e-145B8ANJ6_ORYSI; Uncharacterized protein
TrEMBLB9FA351e-145B9FA35_ORYSJ; Uncharacterized protein
TrEMBLI1PDY91e-140I1PDY9_ORYGL; Uncharacterized protein
STRINGORGLA03G0258500.11e-141(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154991216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.17e-14G2-like family protein