PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010258-PA
Common NameOsI_12585
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 234aa    MW: 23702.6 Da    PI: 6.4849
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010258-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.61.1e-292104198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+
  BGIOSGA010258-PA   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLC 94 
                       6*********************9999888899************************************************************* PP

            DUF260  89 qlkaelallk 98 
                       q++a+++l++
  BGIOSGA010258-PA  95 QAAADAVLRG 104
                       ****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6821107IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGDSLRAL SAVPAAFTDR  120
DMAGLYGNVG AAAGTSSSSP DNDNSASAAP RRKRPRNNGA GAGVGQQQLP HAVAAVLQSC  180
ELDLCLTPVS PPAVQLVGGG GGGGGASDEH STTTCEEASD GDGAGAPTLL NLFS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.201350.0callus| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880020.0AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628211.11e-153LOB domain-containing protein 38
TrEMBLA2XJG61e-167A2XJG6_ORYSI; Uncharacterized protein
STRINGOGLUM03G26640.11e-153(Oryza glumipatula)
STRINGOS03T0609500-011e-153(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-56LOB domain-containing protein 37