PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA010323-PA

Common Name

OsI_12465

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 336aa MW: 38933.9 Da PI: 6.4435

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA010323-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.3	2.5e-23	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+n+Y+ + GF+vrk++++k+k ++++ ++++vC +eg+r+e+k++ + ++ +raetrt+C+ ++ v +++ +g+++v++l+leHnH l+ BGIOSGA010323-PA 12 FWNSYGGQKGFEVRKRYTNKRKSDEKVRSYRYVCANEGHRKEDKRD-HLTKCPRAETRTDCQVRMGVVLDReKGNYKVADLVLEHNHILQ 100 9****************************************999.999************999998*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-18	12	99	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.3E-27	222	316	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MEFSSTDEAW MFWNSYGGQK GFEVRKRYTN KRKSDEKVRS YRYVCANEGH RKEDKRDHLT 60 KCPRAETRTD CQVRMGVVLD REKGNYKVAD LVLEHNHILQ LPETSHLMVS QRKISELQGF 120 EIETADDAGI GPKAAHELAS IQVGGSLNLS YTLRDHKNYL RGKRQREMAY GQAGSMLMYF 180 QDKIAENPSF QYALQMDQEE QIANIFWVDA KMLTDYAYFG DVVSFDTTFG TNKESRPFGV 240 FVGFNQFRET VVFGAVLMYD ETYESFKWLF ETFLKAHNGK QPKTIYTDQD FAMGKAVKEV 300 FSEVWHGLCT FHIMQNAAKH LAEVDNEEES VLLPNR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB108421	0.0	AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence.
GenBank	AC077693	0.0	AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876513.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	B8ALN6	0.0	B8ALN6_ORYSI; Uncharacterized protein
STRING	Sb09g006170.1	0.0	(Sorghum bicolor)
STRING	Sb10g022742.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-61	FAR1-related sequence 5