PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010324-PA
Common NameOsI_12464
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 149aa    MW: 16553.7 Da    PI: 10.5427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010324-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.6e-09751061044
               AP2  10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                       +++g+WvAeIr p +   r r++lg++++a e + 
  BGIOSGA010324-PA  75 PQWGKWVAEIRLPQN---RVRVWLGTYDSATEQRS 106
                       78**********954...5**********988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.49462126IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-775112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-1076107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MHKSTEKGSK KGGKKKEKGS KEQGTVKKGG KKKEKEATVQ DSAAVQNIYP NTSLPMEELS  60
EPYMAINTFS QILTPQWGKW VAEIRLPQNR VRVWLGTYDS ATEQRSAGRR GAWRGRRGAA  120
LGEDGAALGD DGDGTVLHPQ LQVWMTRWQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.808911e-118callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO73323831e-118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126189e-91CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877975.11e-14protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8ALN51e-104B8ALN5_ORYSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.13e-12ERF family protein