PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010548-PA
Common NameOsI_12001
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 249aa    MW: 25731.2 Da    PI: 4.9388
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010548-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-0816392247
                      T-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                      g W++Ia +++ gRt++++k++w++ 
  BGIOSGA010548-PA 16 G-WSLIAGRLP-GRTDNEIKNYWNST 39
                      3.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.793144IPR017930Myb domain
SuperFamilySSF466898.16E-71445IPR009057Homeodomain-like
PfamPF002493.6E-61639IPR001005SANT/Myb domain
CDDcd001671.10E-51740No hitNo description
Gene3DG3DSA:1.10.10.607.2E-111740IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MARLLDLAST GTTPVGWSLI AGRLPGRTDN EIKNYWNSTL SKRVAMQRTA AATSMPAAAT  60
TSSNADAAGA AARRRRSPEP RTVVVSPIRT KALRCNNNSS SGIVVVQQAG ACSHGGRPPE  120
SGAPGDAAAD KVATPQAVQQ QQQQELAGAE DDDDLPVPAV CIDLDLDDIE LGGLDGFLIS  180
PWRGGGHDDG NAAAGAVPNL PMPIGYELGG AGGGGEAGAV DLEALLGQLE AEEDDDGDHH  240
HHHHHHHHQ
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329958920.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1134330.0AC113433.8 Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete sequence.
GenBankAK1106830.0AK110683.1 Oryza sativa Japonica Group cDNA clone:002-169-H06, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629423.11e-167anthocyanin regulatory C1 protein
TrEMBLA2XHV81e-179A2XHV8_ORYSI; Uncharacterized protein
TrEMBLQ75K451e-179Q75K45_ORYSJ; Myb-like protein
STRINGORUFI03G21770.11e-167(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2000155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-10MYB family protein