PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010657-PA
Common NameOsI_11758
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 366aa    MW: 40163.6 Da    PI: 9.1524
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010657-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-3289145259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i Y+g+Hnh+
  BGIOSGA010657-PA  89 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQILYRGQHNHQ 145
                       8****************************************.***************8 PP
2WRKY104.74.9e-33255313159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  BGIOSGA010657-PA 255 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 313
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-2979147IPR003657WRKY domain
PROSITE profilePS5081124.59383147IPR003657WRKY domain
SuperFamilySSF1182903.53E-2683147IPR003657WRKY domain
SMARTSM007744.4E-3488146IPR003657WRKY domain
PfamPF031061.4E-2489145IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-36242315IPR003657WRKY domain
SuperFamilySSF1182901.57E-29247315IPR003657WRKY domain
PROSITE profilePS5081137.172250315IPR003657WRKY domain
SMARTSM007741.0E-38255314IPR003657WRKY domain
PfamPF031061.1E-25256313IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSHQQALAQV TAEAVHSPYS MINQSDFSLP FSSTTTSVLA SQHVNSSANV SSPREIPTLP  60
SHTDNSNIES TEVSHGFQTT ALTEDKPADD GYNWRKYGQK AVKGGEYPRS YYKCTHLSCP  120
VKKKVERSSD GQITQILYRG QHNHQRPPKR RSKDGGALLN EADVSPEKED ASTRSEQGSQ  180
DYSGKFKASN DGGPSSSRRG DRGEQISGSS DSNDQGEEEV KVEGRATSDG NANKRHVPAP  240
AQRIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTYQGCDVKK HIERSSQDPK  300
AVITTYEGKH SHDVPAARNS SHSSANANVS SSSNLPHKDR GQRSSRRDGL RNASSVSSLQ  360
LKEESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-3974316578Probable WRKY transcription factor 4
2lex_A4e-3974316578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RPPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.23530.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2389282380.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1938020.0AF193802.2 Oryza sativa zinc finger transcription factor WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633314.10.0probable WRKY transcription factor 4 isoform X1
RefseqXP_025880061.10.0probable WRKY transcription factor 4 isoform X3
TrEMBLB8AQ850.0B8AQ85_ORYSI; Uncharacterized protein
STRINGOBART03G22810.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.12e-91WRKY DNA-binding protein 4