PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010987-PA
Common NameOsI_11011
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 191aa    MW: 19708.4 Da    PI: 7.0992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010987-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00175173123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F++   L  H  +H
  BGIOSGA010987-PA 51 FECKTCNRQFPSFQALGGHRASH 73
                      89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.67E-849116No hitNo description
SMARTSM003550.165173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8275178IPR007087Zinc finger, C2H2
PfamPF139121.2E-125175IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PfamPF139124.2E-993118IPR007087Zinc finger, C2H2
SMARTSM003552.594116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAYGKRPRQQ AEEAAFSLFD SSDMARIMLL FSGAHGGGGG AAAASPPERM FECKTCNRQF  60
PSFQALGGHR ASHKKPRLAD GDPAAEAPAK PKVHGCSICG LEFAVGQALG GHMRRHRAVM  120
ADGLGLGLSL GLGIGVVGQS DDDGGKKKAA AAAAAAELVF DLNAPAIEEE PDRARPAGLA  180
VEFPVVVDFP C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8331990.0CT833199.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN044A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630125.11e-134zinc finger protein ZAT7
TrEMBLA0A0E0FLU71e-133A0A0E0FLU7_ORYNI; Uncharacterized protein
TrEMBLA2XF721e-133A2XF72_ORYSI; Uncharacterized protein
TrEMBLQ10N751e-133Q10N75_ORYSJ; Os03g0279700 protein
STRINGOS03T0279700-011e-133(Oryza sativa)
STRINGONIVA01G18540.11e-133(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-26C2H2 family protein