PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA011007-PA

Common Name

OsI_10980

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 400aa MW: 40596.9 Da PI: 9.6676

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA011007-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.8e-39	83	142	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e alkcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+s BGIOSGA011007-PA 83 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKRS 142 67899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-36	67	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-33	86	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.758	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLAVGP TAAAAAPGEI GGLPTSSSSA 60 SAAQQARPNS MAERARLARA PQPEPALKCP RCDSTNTKFC YYNNYSLSQP RHFCKTCRRY 120 WTRGGSLRNV PVGGGCRRNK RSGKSSSAAA AGASSSSSKP SSSAARQLPG GGASPMPSAA 180 ASTQPGGAAA GAIIPPSGLS SMSHHLPFLG AMHPPGPNLG LTFSAGFQPL GGMHHHVDTA 240 DQFPVASGGG ATIGASLEQW RVQQQQQQQQ PQQHQFPFLG GALELPPPPP MYQLGLEATR 300 AAGTGATAAA AFTLGQTSAT ASTSRQEGSM KLEDSKGLEM SLQRQYMAAL RQGDGVWGNN 360 NGGNGGSDGG GNGGGGSWTM NFPGFHSSSG GGGDDGGGVL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLAVGP TAAAAAPGEI GGLPTSSSSA  60
SAAQQARPNS MAERARLARA PQPEPALKCP RCDSTNTKFC YYNNYSLSQP RHFCKTCRRY  120
WTRGGSLRNV PVGGGCRRNK RSGKSSSAAA AGASSSSSKP SSSAARQLPG GGASPMPSAA  180
ASTQPGGAAA GAIIPPSGLS SMSHHLPFLG AMHPPGPNLG LTFSAGFQPL GGMHHHVDTA  240
DQFPVASGGG ATIGASLEQW RVQQQQQQQQ PQQHQFPFLG GALELPPPPP MYQLGLEATR  300
AAGTGATAAA AFTLGQTSAT ASTSRQEGSM KLEDSKGLEM SLQRQYMAAL RQGDGVWGNN  360
NGGNGGSDGG GNGGGGSWTM NFPGFHSSSG GGGDDGGGVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629100.1	0.0	dof zinc finger protein DOF3.6 isoform X1
TrEMBL	A2XF38	0.0	A2XF38_ORYSI; Uncharacterized protein
STRING	OMERI03G11610.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	3e-42	OBF-binding protein 3