PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA011154-PA

Common Name

OsI_10672

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 377aa MW: 41359.8 Da PI: 6.1017

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA011154-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.4e-08	144	166	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W+ Ia+ ++ gRt++++k++w++ BGIOSGA011154-PA 144 RWSIIASQLP-GRTDNDIKNYWNT 166 6*******.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07893	1.3E-29	3	131	IPR012871	Protein of unknown function DUF1677, Oryza sativa
SuperFamily	SSF46689	1.09E-7	140	173	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-12	141	174	IPR009057	Homeodomain-like
CDD	cd00167	6.56E-6	143	168	No hit	No description
PROSITE profile	PS50090	6.249	144	168	IPR017877	Myb-like domain
Pfam	PF00249	8.6E-6	144	166	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MQITSYAMHP DGRTVFVSAT SGKHHGTFSS SLDDDNEWTR RGDWLLPFHG QGHYDAKLRA 60 WVGLHSPGHV CTCDVPSTTF SSVAAATSQP PAWQLVNAEH LFQEDHPERG GTSLVSTGDA 120 EFCIVESVTP KWMDPVWDRD EIDRWSIIAS QLPGRTDNDI KNYWNTKLKK KLLGSSAVAA 180 AAPPRIQRHQ QSHHRSSLLL PNSPSLNPGG GYPGFFSGAG GFHPQEPAMP LTLPIDTQEF 240 MLGTHSGLPM LLVKEEISSN MIVFGSDQQS CSSSDGLAAP HSHNHHGNRE FILDGYSYGV 300 GYGSSCIDQV DNDKLFQHHH QQDQAQEQQQ QLVYNYDEIK QLLMNTSTTS NSINAGQDHG 360 GSMEAGLIGS QGKVTMM

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MQITSYAMHP DGRTVFVSAT SGKHHGTFSS SLDDDNEWTR RGDWLLPFHG QGHYDAKLRA  60
WVGLHSPGHV CTCDVPSTTF SSVAAATSQP PAWQLVNAEH LFQEDHPERG GTSLVSTGDA  120
EFCIVESVTP KWMDPVWDRD EIDRWSIIAS QLPGRTDNDI KNYWNTKLKK KLLGSSAVAA  180
AAPPRIQRHQ QSHHRSSLLL PNSPSLNPGG GYPGFFSGAG GFHPQEPAMP LTLPIDTQEF  240
MLGTHSGLPM LLVKEEISSN MIVFGSDQQS CSSSDGLAAP HSHNHHGNRE FILDGYSYGV  300
GYGSSCIDQV DNDKLFQHHH QQDQAQEQQQ QLVYNYDEIK QLLMNTSTTS NSINAGQDHG  360
GSMEAGLIGS QGKVTMM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.91599	1e-124	root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020403942.1	1e-39	transcription factor RAX2
TrEMBL	B8AJP4	0.0	B8AJP4_ORYSI; Uncharacterized protein
STRING	ORUFI04G05540.1	1e-134	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	9e-14	myb domain protein 36