PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011328-PA
Common NameOsI_10275
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 251aa    MW: 27397.1 Da    PI: 5.4391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011328-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19110159255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++G+r+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a++  +++l+g
  BGIOSGA011328-PA 110 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 159
                       69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-28109163IPR001471AP2/ERF domain
PROSITE profilePS5103221.496110168IPR001471AP2/ERF domain
SMARTSM003803.8E-31110173IPR001471AP2/ERF domain
PfamPF008471.9E-12110159IPR001471AP2/ERF domain
CDDcd000181.12E-25110162No hitNo description
SuperFamilySSF541711.63E-19110162IPR016177DNA-binding domain
PRINTSPR003672.8E-11111122IPR001471AP2/ERF domain
PRINTSPR003672.8E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGAILAEF IPAPSRAAAA TKRVTASHLW PAGSKNAARG KSKSKRQQRS FADVDDFEAA  60
FEQFDDDSDF DDAEEEDEGH FVFASKSRVV AGHDWRAAAR AASKKKRGRH FRGIRQRPWG  120
KWAAEIRDPH KGTRVWLGTF NTPEEAARAY DVEARRLRGS KAKSGGSPAK KARSDDVDSS  180
EGSVGGGSDT LGFTDELEFD PFMLFQLPYS DGYESIDSLF AAGDANSANT DMNAGVNLWS  240
FDDFPIDGAL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19107162258ATERF1
3gcc_A2e-19107162258ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.64580.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172286000.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605270.0AK060527.1 Oryza sativa Japonica Group cDNA clone:001-020-F02, full insert sequence.
GenBankAK1019490.0AK101949.1 Oryza sativa Japonica Group cDNA clone:J033075D23, full insert sequence.
GenBankEU8372580.0EU837258.1 Oryza sativa Japonica Group clone KCS050F04 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630585.11e-83ethylene-responsive transcription factor ERF073
TrEMBLA2XD921e-180A2XD92_ORYSI; Uncharacterized protein
STRINGOMERI03G05840.12e-87(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-23ERF family protein