PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011396-PA
Common NameOsI_10143
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 225aa    MW: 26240.8 Da    PI: 9.881
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011396-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.87.8e-2812102290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn+YAke GFsvrk++s++ + +g i +r+f+Cs+eg+r+e   + + ++r++ra t++gC+a++++k+++ +g+w+vt+++ +HnH+l+
  BGIOSGA011396-PA  12 FYNQYAKEKGFSVRKDYSRRDRFSGLIFHRRFTCSREGFRKEVYMDySGRTREPRALTHCGCNAHFEIKLDEiKGHWYVTRFVADHNHPLC 102
                       ******************************************99887889999*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-2612103IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKFSSEDEGF AFYNQYAKEK GFSVRKDYSR RDRFSGLIFH RRFTCSREGF RKEVYMDYSG  60
RTREPRALTH CGCNAHFEIK LDEIKGHWYV TRFVADHNHP LCKADEVAFL RSHRRITPAQ  120
QAKLVELRNL GLHQHQVMDV IERDHGGFEG AGFVTRDLYN FFVKMKKKRI DGGDADRVIK  180
YMQAQAELDA KASQSVPFTS NDSTLIEKDA ARVFTPKIFK KVKVE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1008620.0callus
Os.382780.0callus| flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329733840.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632970.11e-132protein FAR1-RELATED SEQUENCE 5
TrEMBLB8ANX41e-167B8ANX4_ORYSI; Uncharacterized protein
STRINGOS03T0164400-011e-131(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-29FAR1-related sequence 5