PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA011583-PA

Common Name

OsI_09711

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 114aa MW: 11765 Da PI: 4.6997

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA011583-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.5	3.6e-13	61	96	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+ BGIOSGA011583-PA 61 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSR 96 8**********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MPPFSAAGGE GAPSPISSRP PPPEQAAAAA AEEQLNGSSL EHDGVLGGEE GDRGGSSAGN 60 RWPRQETLAL LKIRSEMDAA FREAALKGPL WEEVSRSDVI KHAASIPSPT IPKG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.39576	1e-162	flower\| leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297600228	1e-162

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC121490	1e-159	AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBank	AC134237	1e-159	AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence.
GenBank	AK241800	1e-159	AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
GenBank	AP014959	1e-159	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628078.1	2e-56	trihelix transcription factor GTL1
TrEMBL	A2XBP9	2e-73	A2XBP9_ORYSI; Uncharacterized protein
STRING	OGLUM03G01010.1	8e-56	(Oryza glumipatula)
STRING	ORUFI03G00820.1	9e-56	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15223	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-16	Trihelix family protein