PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011698-PA
Common NameOsI_09704
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 1796aa    MW: 197754 Da    PI: 5.383
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011698-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-0617761796526
                        --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                        +C+ f+++G+C+ G++C++ H+
  BGIOSGA011698-PA 1776 ICK-FHENGYCRKGASCNYLHP 1796
                        799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.9E-9110169IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.54E-8110161IPR011011Zinc finger, FYVE/PHD-type
CDDcd155681.13E-19116161No hitNo description
SMARTSM002491.6E-6116162IPR001965Zinc finger, PHD-type
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.7E-5341429IPR019835SWIB domain
SuperFamilySSF475927.19E-22347426IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.1E-26348431IPR003121SWIB/MDM2 domain
PfamPF022011.1E-16351424IPR003121SWIB/MDM2 domain
SMARTSM007191.6E-43485594IPR004343Plus-3 domain
PROSITE profilePS5136031.898485617IPR004343Plus-3 domain
SuperFamilySSF1590424.18E-34485610IPR004343Plus-3 domain
PfamPF031262.4E-25490593IPR004343Plus-3 domain
SuperFamilySSF552771.44E-15762828IPR003169GYF domain
PROSITE profilePS5082914.522775827IPR003169GYF domain
SMARTSM004442.0E-13776829IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-14777828IPR003169GYF domain
PfamPF022133.6E-9778817IPR003169GYF domain
PROSITE profilePS5010314.12617711796IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.01E-517731795IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1796 aa     Download sequence    Send to blast
MEGAAAAAGG GEMLSPGEAD WPPELRLPPP PPPSAASEGE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
DLKGKLSLTL EELTSAKARW NAPTTYTRKE KDESSDDLYD ANNDDDAGSD CSSGKRKRNS  300
SRKKGRKRRK PDSDCSIATK KVETVTRDDG TLPNKVPTEE ASLPVDTKWA SPELLEFVGH  360
MRDGDQSFIS QFDVQALLLD YIKQNNLRDP QRKSQIICDS RLHRLFRKTR VAHFEMLKLL  420
EMHFIVSEPS AVNDGSQGII NPDSAQIDHA SGYNDMAAKF SPDRRRRMHR KMEREPQANP  480
EDYAAIDMHN INLIYLRRSL MEDLIDDPTL SDKISGAFVR IRISGLGQKQ DMYRLVKVVG  540
THKVSEKYSI GKKMTNFALE IMNLNKKEII TMDTVSNQDF TEEECKRLRQ SMKYDLISRL  600
KVGDIQEKAK IFQFVRVNDW FENEKQKLCH LRDRAKCVEK LQLLNTPEER ARRINEVLDV  660
HVDSHMDPDY ESDDEFGNKK AVERSVNWAR SDPFVSPVKV KYSNSSQKNG DATRHLKNLS  720
KQNTERKSGA ARNFENSHSP VGMDIPKSGT NVKSTRCETT SPSSHGVVSS DMEPEKVWHY  780
KDPSGNVQGP FTLVQLSKWT SYFPRDMRVW LTFESEERSL LLTEVLSKQP KDFGQPASVT  840
TSSKSTVADT GQNRNTEIVD LNKAPSPVGY SMLNSFETTV QSTKHSAPER ESVNSLDDRL  900
SHSTDSVPPK DANASNSQAM CQIKHSGSLP SPGSPHQRSD LHHDEVQGGR SGEWNNQHNS  960
ELWSPSMPQT SSSAHSNVES HHDHYPSWSQ VQHDPKNSLQ AGSGKDLNSR YDIAQKLPSQ  1020
RITRDVPSPV FAWSPSESRT ASSQHEGSCL SSTTNLCTHD ELHSSIASAK AKSFAPATPV  1080
EDRGSSSPSG MLSLSERAPI CSPQSAPSAS ASDTCKMEEN MNQQKTLEAD ISNTSVNQSP  1140
QSKILPESSP DNQDAEHEYR SPPPISESKE LSPQSRTTPG SSPDNQDTER EYPSPPPISG  1200
SKEISPQSRT ILESSPDNQD NGHEYPSPPP IPESIELSPH SKALPESSPD NQDIEPECPS  1260
PPQIPESKEL SRQSKILPES SPGNQDIEPE CPSPPQIPES KELSQQSKIL PESSPDNHDI  1320
KCEYSSPTPI PESKELSLQS KILPESSSDY QDIKCEDPSP TPISKSKEVS PQSKILSESY  1380
LDNQDVECEC PSSILITESK ELAVDLPGSI SLAPEKTAST DVGENSSLAF IFPKSTLAGD  1440
DALKSVFDMA KAHLECEDSK VKEELYVEST VVIRDDMVVN PASGVESIDM SENLLESLME  1500
QSCGTFYMDG TTALEGFLSG STKEEPQCSS PIALSTCSSP IALSPWGEHG YYQGDSVGSS  1560
LWGVQDDDPI GNIWPLSSQA PALQYSSGST AHFIDEATVT HGNNGVVLSS TPGEVGLPNS  1620
GVCTDWGLVE QVNPEANDAS VSMIDKNSGL VDSQPSANDG SDVGTARNTN HNTNLSLNHE  1680
TAVPLSRSSG EASRKHGFIT DLNVATSEEA LGNTKNWNPS AGNANRGSQR NHHRDRYSQI  1740
SESWLLSSNY SRSRSDGFGT GGSSRSTPRG QTQRGICKFH ENGYCRKGAS CNYLHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295309RKRNSSRKKGRKRRK
2295310RKRNSSRKKGRKRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.95530.0callus| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887580.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLB8ALH10.0B8ALH1_ORYSI; Uncharacterized protein
STRINGONIVA03G01110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding