PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011723-PA
Common NameOsI_09748
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 199aa    MW: 20850.2 Da    PI: 4.9037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011723-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-172474156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      + y+G+r +  +g+Wv+eIr+p   gk+ r++lg++ t+e+Aa+a++aa+++l+g+
  BGIOSGA011723-PA 24 PVYRGIRLR--SGKWVSEIREP---GKSSRIWLGTYPTPEMAAAAYDAAALALRGA 74
                      68****986..5*********8...557*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-112473IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-182581IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-272581IPR001471AP2/ERF domain
PROSITE profilePS5103220.1262581IPR001471AP2/ERF domain
SMARTSM003803.4E-272587IPR001471AP2/ERF domain
CDDcd000183.90E-152681No hitNo description
PRINTSPR003671.3E-62637IPR001471AP2/ERF domain
PRINTSPR003671.3E-66383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDRDESLGTQ PLTGRRVRAD TRHPVYRGIR LRSGKWVSEI REPGKSSRIW LGTYPTPEMA  60
AAAYDAAALA LRGADAALNF PGTATSRPAP ASGSPDDIRA AAAAAAAMIG SGHRGNQRAA  120
DASTSRAAPA PEVAVAAGAG DQKRVVDEDD VFEMPRLLVS MAEGLMMNPP RLSPSTDGVG  180
GVSPEDDEDE DGMSLWNHS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329941390.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880266.11e-108ethylene-responsive transcription factor ERF027
RefseqXP_025880267.11e-108ethylene-responsive transcription factor ERF027
TrEMBLA2XBT21e-138A2XBT2_ORYSI; Uncharacterized protein
STRINGONIVA09G11510.11e-137(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-29ERF family protein